Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03291 ATGCCCCCAACGGTTCAACTGATACGCGCAAGAACGGCTCTGATAGCGCTTTGGTGCAGCGAGCGGCGTAGGAATATCACAGACAACCCACTCGTGCCTCTACCTCATCGCACCGTTCATCACCATCACAAACTCAACAACAACATACATACCATACGAGGTGAAGCTTCCCTTCATGTCGAGTTGAATTCGAGTAATTCACCATGGGTTCTTCTTACAATTGTGGTCAACCCTCTGTATTGGATCTGGGGTGTCCTTCGTGTTTGGGACGAAGTTAGGGTTTACGCCCAATTTCGCCTCAAATTTTGGGGATTTCTGAAGCTTCTTTCTGGTTTGGTGATTGAAGCTGCGATGGAGGAAGAGACCTCCGATGCAATGAATCTTGATTTGAATCTGGGTCCAGGCCCAGAGCCTGAAACTGGCCCAATAAATAACGAAGCTGTGAACTTGGACGATTGGATAGGGGAGCCTCTTCAGAGAATTAGCGAAGCTGTGAGGTTTAGGGCACGACATCGGTGGCGATGGCGGCATCTTCCGCTACCGCATTCTGAACTTCATGTTCACATCCCACCTGAAGCTGCGCGGCATTTTCATATACCACCTGAGGCTCACAATATCTCCATGGAATTGAACCAGTTTTTGGTCAATTCTGGAAACGGGACTGCCTTACAGGCTGGGGAAGGCAGTGTGGCGGCGGAGGAGAGAATGGAGGAGGCGCCGAAGGCGTGTGAGAATGTCAATGGTGTTGCAGAGGACGAGGCTTCACAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCACTGATGGAGACTTTTTTGATTGTAACATATGTTTGGACATCTCTAGGGATCCTGTTGTTACTTGTTGCGGCCATTTGTTTTGTTGGCCTTGCCTTTATAGGTGGTTGCATCTGCATTCGGATGCGAAGGAGTGTCCCGTTTGTAAGGGAGAGGTGACTCTTAAAAGTGTTACCCCAATATATGGCCGTGGGAACATTGTACGAGGTGGTGAAGAGGATACTGCTCTTAAGATCCCTCCCCGGCCTCAAGCAAGGAGAGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCTTTTGCACTCCCTGTGGAAGAGATGATTCGGCGTCTCGGAAGCAGAATTGATCTTACTCGTGATTTTGTTCAGCCACATGAAGTAGATGGTACCCGAGAAACCGCAGATAGAACTACCTCCTTGCTAAGTAGGTTCTTAACTGCTCGAGGCATACGGAGAGAGCAGAATTTAGTGGCACCCCCAGAGGATGTAATGGGTTTGGCTCAGAATAATGTAAATGCTGCCGAGGCAGGGGATAACCGAAGTAGGGTGCAATCCCATTTGCTTCGAAGAACACAATCACACAGAGCAACTCTTTCTACTCTTTCATCAGCACTCACTTCTGCTGAAAGATTAGTTGAGGCATATTTCCGTAGCAATCCAATAGGTAGGAACCAAGAACAACCTCCTCCTCCAGTTGATGACAGGGACTCCTTTTCAAGCATTGGTGCTGTGATAAATTCAGAGAGTCAAGTCGACACTGCTGTAGAGATTGATTCCATGGTATCCTTGTCAACGTCCTCTTCTAGGAGGAGGAATGATACTTCAAGATTGTCTGATGTCGATAGTGGAGATTCTCGTGCTCCAAGGCGCAGACGTTTGAACTGA 1680 0.4804 MPPTVQLIRARTALIALWCSERRRNITDNPLVPLPHRTVHHHHKLNNNIHTIRGEASLHVELNSSNSPWVLLTIVVNPLYWIWGVLRVWDEVRVYAQFRLKFWGFLKLLSGLVIEAAMEEETSDAMNLDLNLGPGPEPETGPINNEAVNLDDWIGEPLQRISEAVRFRARHRWRWRHLPLPHSELHVHIPPEAARHFHIPPEAHNISMELNQFLVNSGNGTALQAGEGSVAAEERMEEAPKACENVNGVAEDEASQKKDDVEKGSGTDGDFFDCNICLDISRDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNIVRGGEEDTALKIPPRPQARRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDFVQPHEVDGTRETADRTTSLLSRFLTARGIRREQNLVAPPEDVMGLAQNNVNAAEAGDNRSRVQSHLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPIGRNQEQPPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDTSRLSDVDSGDSRAPRRRRLN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03291 559 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 240 435 IPR045103 GO:0005783|GO:0006511|GO:0061630
Spst1g03291 559 MobiDBLite consensus disorder prediction 537 559 - -
Spst1g03291 559 MobiDBLite consensus disorder prediction 244 264 - -
Spst1g03291 559 SMART ring_2 274 314 IPR001841 -
Spst1g03291 559 MobiDBLite consensus disorder prediction 526 559 - -
Spst1g03291 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 342 IPR013083 -
Spst1g03291 559 SUPERFAMILY RING/U-box 269 330 - -
Spst1g03291 559 FunFam E3 ubiquitin-protein ligase RMA3 242 363 - -
Spst1g03291 559 Pfam Zinc finger, C3HC4 type (RING finger) 274 314 - -
Spst1g03291 559 ProSitePatterns Zinc finger RING-type signature. 289 298 IPR017907 -
Spst1g03291 559 ProSiteProfiles Zinc finger RING-type profile. 274 315 IPR001841 -
Spst1g03291 559 MobiDBLite consensus disorder prediction 483 503 - -
Spst1g03291 559 CDD RING-HC_AtRMA-like 272 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03291 Spst-Chr1 41485495 41490408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03291 118 550 C3H Transcription Factor Family AT3G58030 54.102 2.68e-140 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03291 K10666 - gmx:100811099 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03291 1 41485495 41490408 Spst1g03291 1 41485495 41490408 ECH