Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03289 ATGGAATTGGGTTTGAGTTTAGGCAACACACCCAAGCCCTTATCTTTCCCCACAAACAATGCTTCTTCGCTAAGACCTTCCTCAGATCCACCCATTCAGCTCCACCTTCTTCCTTCAACACCTGTTCTTCCTTCTTCACACCTTCCCATTCCATGGCTCTCCCGTGCACTAGGCATGGAACGTGTGGCATCGGAGATTCCGGTGAGGGCCGTGGACGACACCGACGACGGTGCTGCAGTTTCGTCCCCCACCAGTGCAGTCTCGTCTTTTAGGATGGATTTTTGGAGCAGAAAGTCTTGTGACGGTGCCAGCGACTACAACGAAAATGGGTCAACAAGGAAGAAACTCAGACTCTCCAAAACACAATCAGCTTTTCTCGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAACAAAAACTTGCCCTTGCGAAAGAGCTCAATCTCCGTCCCCGTCAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGAACAAAGTTGAAGCAGACAGAGGTTGATTGTGAGTACTTGAAGAGGTGTTGTGAGAGTCTGACAGAAGAGAATAGGAGGTTGCAGAAGGAACTGCAAGAACTGAGGGCTTTCAAAACTTGCCAACCGTTTTTCATGCAGCTTCCGGCCACCACCCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCAACACTAACACCCCCGGCGCCGCCGCCACCAATGATAATAGTGTTTCTCAAATCTCTGCCTTGGAGAAGCCCAGATCATTGCCCTGA 771 0.5058 MELGLSLGNTPKPLSFPTNNASSLRPSSDPPIQLHLLPSTPVLPSSHLPIPWLSRALGMERVASEIPVRAVDDTDDGAAVSSPTSAVSSFRMDFWSRKSCDGASDYNENGSTRKKLRLSKTQSAFLEDSFKEHTTLNPKQKLALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRAFKTCQPFFMQLPATTLTMCPSCERVATNTNTPGAAATNDNSVSQISALEKPRSLP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03289 256 Gene3D - 117 167 - -
Spst1g03289 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 4 239 - -
Spst1g03289 256 Pfam Homeobox associated leucine zipper 169 201 IPR003106 GO:0006355|GO:0043565
Spst1g03289 256 MobiDBLite consensus disorder prediction 1 29 - -
Spst1g03289 256 Pfam Homeodomain 113 167 IPR001356 GO:0003677
Spst1g03289 256 CDD bZIP 162 201 - -
Spst1g03289 256 FunFam Homeobox-leucine zipper protein 18 100 174 - -
Spst1g03289 256 CDD homeodomain 113 170 IPR001356 GO:0003677
Spst1g03289 256 MobiDBLite consensus disorder prediction 231 256 - -
Spst1g03289 256 Coils Coil 175 202 - -
Spst1g03289 256 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677
Spst1g03289 256 SUPERFAMILY Homeodomain-like 94 170 IPR009057 -
Spst1g03289 256 SMART halz 169 212 IPR003106 GO:0006355|GO:0043565
Spst1g03289 256 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981|GO:0006355
Spst1g03289 256 SMART HOX_1 111 173 IPR001356 GO:0003677
Spst1g03289 256 MobiDBLite consensus disorder prediction 11 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03289 Spst-Chr1 41474168 41475195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03289 105 253 Homeobox Transcription Factor Family AT4G37790 66.000 4.83e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst1g03289 Homeodomain 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03289 K09338 - gmx:100810885 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03289 1 41474168 41475195 Spst1g03289 1 41474168 41475195 ECH
Spst1g03289 1 41474168 41475195 Spst7g00238 7 1815568 1817252 PCT