Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03283 ATGGTGAATGGTGGTCAATTGATTCAGTTTTGTGTAAGATTTAAGGAACAGGAGCTGCTAGATGCCATTAAGCAACATGTAGCATTCCATAAAAGTAAGAGCTCTGGTTCCTTCTTATCAGGAAAGAAATACTGTAGATCTGGGTTAGCAATGACTCCTGGAAGCAGTGTTTTCAAGGAAGTTCTTGAATCTCATCTGATGTCTTCAGATTATGAAACAGGCAAGGCTAAATCTGAGGCCAAGAGTAATAGTACATCTACAAAATCTGGTGTTGGGTTGAATGGAAAGAACGGAGTTAGTTCAAATAATGGGGTGTACGAATTACTTGGATGCTCTGTTTGCAAGAACTTAATGTATCCCCCGATTCACCAGTGTCCAAATGGCCATACATTATGTTACCACTGTAAAGTTGAAGTCCATAATATCTGCCCAACCTGTCATCATGATCTTGGAAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTAGGATGTCATGATATATTCCCTTACTATACCAAGCTCAAGCACGAGCAAAACTGTGGATTTCGTCCATACAATTGCCCTTATGCTGGATCTGAGTGCTCAGTGATGGGTGACATTCCGACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCACCGATATGTAAAAGCAAATCCTCATGAAGTTGAAAACGCCACATGGATGCTAACTGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCATTCCAGCTTGGGTCAGCTCCAGTGTATATGGCTTTTTTGCGATTTATGGGTGATGACTATGAAGCAAAGAAATTCAGCTACAGCTTAGAAGTTGGTGCAAATGGGCGCAAACTGATATGGCAAGGGATTCCAAGGAGCATTCGGGATAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAGAGACAGGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAGAGAAGATTGA 1080 0.413 MVNGGQLIQFCVRFKEQELLDAIKQHVAFHKSKSSGSFLSGKKYCRSGLAMTPGSSVFKEVLESHLMSSDYETGKAKSEAKSNSTSTKSGVGLNGKNGVSSNNGVYELLGCSVCKNLMYPPIHQCPNGHTLCYHCKVEVHNICPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDYEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWRED 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03283 359 Pfam Seven in absentia protein family 153 352 IPR018121 GO:0005737|GO:0006511|GO:0007275
Spst1g03283 359 SUPERFAMILY RING/U-box 103 153 - -
Spst1g03283 359 CDD RING-HC_SIAHs 109 147 - -
Spst1g03283 359 FunFam E3 ubiquitin-protein ligase SINAT5-like 220 352 - -
Spst1g03283 359 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 78 357 - -
Spst1g03283 359 ProSiteProfiles Zinc finger RING-type profile. 111 147 IPR001841 -
Spst1g03283 359 FunFam E3 ubiquitin-protein ligase SINAT3 163 219 - -
Spst1g03283 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 198 IPR013083 -
Spst1g03283 359 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 222 352 IPR008974 GO:0005515
Spst1g03283 359 FunFam E3 ubiquitin-protein ligase SINAT5-like 63 162 - -
Spst1g03283 359 MobiDBLite consensus disorder prediction 73 93 - -
Spst1g03283 359 ProSiteProfiles Zinc finger SIAH-type profile. 164 224 IPR013010 GO:0008270
Spst1g03283 359 MobiDBLite consensus disorder prediction 78 93 - -
Spst1g03283 359 SUPERFAMILY TRAF domain-like 164 356 - -
Spst1g03283 359 Gene3D Classic Zinc Finger 199 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03283 Spst-Chr1 41399482 41402770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03283 51 359 C3H Transcription Factor Family AT2G41980 78.964 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03283 K04506 - gmx:100500061 627.476