Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03282 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGGCCCCCCTGCAAACCAATACACTGCACCACCTAGAGGGGGTAGCACATACGGTGGAGGAAACGATAGAGGAGAGCCTAGAGGCAGTATGGCAAAGAGTGGTGCCCCGCAGAAAGTATTGCCAATTGAGATACCCTCTATTCCATTGGATGAGTTAAATAGGTTAACAGGAAACTTTGGTACAAAGGCTTTTATTGGCGAAGGTTCCTACGGACGGGTTTACTATGCAAAATTGAGTGATGGTACTGATGCTGCAATTAAGAAGCTAGATAATAGTTCTTCCCCAGAACCTGACTCCGATTTTGGGGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATGACAACTTTGTGGAGTTGATTGGATATTGTCTAGAGGCAGAAAACAGAATTTTGGTTTACCAACATGCAAGTCTTGGTTCTTTGCATGACGTGTTACATGGAAGGAAGGGTGTACAAGGGGCTGAACCTGGTCCGGTTTTAAATTGGAACCAGAGAGCCAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGCGATGTTAGATCCAGCAATGTCTTGCTGTTCAATGACTATGAGGCCAAGATAGCTGATTTCAGCTTGACAAATCAGTCTTCTGACACGGCCGCTCGGCTACATTCAACAAGAGTATTGGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGTGTTGTGCTATTAGAACTCTTGACTGGAAGAAAGCCAGTAGATCACACAATGCCTAAAGGACAACAAAGTCTTGTGACTTGGGCAACTCCAAGGCTGAGTGAGGACAAAGTGAAACAGTGTGTTGATCCTAAGCTAAACAATGAGTATCCGCCGAAGGCTATTGCTAAGTTGGCAGCAGTGGCTGCACTTTGTGTTCAGTATGAAGCAGACTTCAGACCAAACATGACGATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATGCCAAACCACCTGGTCCTGAACCTCCAGCTTGA 1095 0.4557 MLCCGGAEEESSGPPANQYTAPPRGGSTYGGGNDRGEPRGSMAKSGAPQKVLPIEIPSIPLDELNRLTGNFGTKAFIGEGSYGRVYYAKLSDGTDAAIKKLDNSSSPEPDSDFGAQLSVVSRLKHDNFVELIGYCLEAENRILVYQHASLGSLHDVLHGRKGVQGAEPGPVLNWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPEPPA 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03282 364 Pfam Protein tyrosine and serine/threonine kinase 75 349 IPR001245 GO:0004672|GO:0006468
Spst1g03282 364 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 357 - -
Spst1g03282 364 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03282 364 SUPERFAMILY Protein kinase-like (PK-like) 50 349 IPR011009 -
Spst1g03282 364 PIRSF ILK 35 356 - -
Spst1g03282 364 SMART tyrkin_6 71 349 IPR020635 GO:0004713|GO:0006468
Spst1g03282 364 MobiDBLite consensus disorder prediction 1 49 - -
Spst1g03282 364 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Spst1g03282 364 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672|GO:0006468
Spst1g03282 364 FunFam PTI1-like tyrosine-protein kinase 3 149 358 - -
Spst1g03282 364 Gene3D Transferase(Phosphotransferase) domain 1 149 357 - -
Spst1g03282 364 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
Spst1g03282 364 FunFam probable protein kinase At2g41970 44 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03282 Spst-Chr1 41394358 41396764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03282 1 350 Receptor kinase-like Gene Family AT4G02010 42.210 7.63e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Spst1g03282 PK_Tyr_Ser-Thr 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03282 - - gmx:100812507 688.337