Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03270 ATGAACAACTCCCCCACCCACGACTTCATGAACGTCGATTCTTTCTCTCAGCTCCCCTTTCTTCGCCCCCCGCCACCCTCCAAAGATAAACCCATTCGCCTCTTCGGCCAAGACTTCTCCCACGCTCCCCAAACCTCCCACACCTCTTCCCAACACAATTCCGACAAGGACCACGCTCACAACAACACCACCACCACCAACACAGAAAACGCCGAGGCCACCCGCAGATTCGAGTGCCATTACTGTTGCAGAAACTTCCCCACTTCCCAGGCCTTGGGCGGCCACCAAAACGCCCACAAACGAGAGCGCCAACACGCCAAACGACACCTCCACTCCGCCATGCTCCAAACCACCCTCTCCGATGCTAACTCCTACGCCTTCATCAACCCCACCTACGCTTCCTCCGCAATCTCTCATTCTTCTTACCCAACGTGGGATTCTAACGCTGCTCGTGGAAGATTCTACGGAAGCTCCTACTCTCACCAACTTCAACCCATCACTGGAAGCCCCTTGGGCTTGTGGCGAATTCCCAACGCCACTGCAACCACTCACCCCCAGAGTAACCCTATTTTACACCACGAACGCGCGTTGCCTCTGCTTGCTCGCGAGGAAATGGTGAACGCGAGAATGGGTCCCTCACCCTCTGGATCGCAAAACCGGTTCAGTTATGACCCCAAACCCACCATAAACGACCATGTGAGTTTGGATCTTCATCTGTAA 720 0.55 MNNSPTHDFMNVDSFSQLPFLRPPPPSKDKPIRLFGQDFSHAPQTSHTSSQHNSDKDHAHNNTTTTNTENAEATRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRHLHSAMLQTTLSDANSYAFINPTYASSAISHSSYPTWDSNAARGRFYGSSYSHQLQPITGSPLGLWRIPNATATTHPQSNPILHHERALPLLAREEMVNARMGPSPSGSQNRFSYDPKPTINDHVSLDLHL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03270 239 SUPERFAMILY beta-beta-alpha zinc fingers 75 105 IPR036236 -
Spst1g03270 239 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Spst1g03270 239 MobiDBLite consensus disorder prediction 40 70 - -
Spst1g03270 239 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 104 IPR013087 -
Spst1g03270 239 Pfam C2H2-type zinc finger 76 101 - -
Spst1g03270 239 PANTHER ZINC FINGER PROTEIN GIS 4 239 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03270 Spst-Chr1 41200733 41201452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03270 6 239 C2H2 Transcription Factor Family AT3G58070 40.152 9.49e-45 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03270 - - pvu:PHAVU_001G144900g 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03270 1 41200733 41201452 Spst1g03270 1 41200733 41201452 ECH
Spst1g03270 1 41200733 41201452 Spst7g00229 7 1722242 1723066 PCT