Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03254 ATGGAGGAGGAGGTGGATTCCCCTGTTGGTGTTCTTGATGATTATTTTTTCCAGAGTTCAGAATCAGAAACTAGTTCTTCCAAAGAACCCGGTACTACGGATTCTGATATGTCAAAGCCCAGTTCTAGGTGGCATGCGTTTCTTCAATTGTTGAGGGTCAAATCGAAAAAGCCAATAGCCACATTACATCCTCTCAGTGTCCTCAAGCTTTCCAGAAGATTGAGCAGTGGCATGAGGGAGACTATAATAGATGCAGATTCGTCCTTGCATAGGCCACCCTGGAAGATCTTCACTCACCATGAGATACAAATTGCAACCAATTACTTCGCCCAAGAAAATTGTATTGGAAAAGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTACCAAATGGTCAGCTTCTCGCAATTAAACGATTGACACGTGGAGCAGAAAATGAAACTATAGGGGACTTCTTATCAGAACTTGGCATAATGGCTCATGTAAACCATCCCAACACTGCTAAGTTAGTTGGCTATGGAGTGGAGGGAGGAATGCATTTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCAGTGCTGAATGGTTCCAAGGAGAAGCTACCGTGGCCTGTTAGGCAGAAAATAGCATTAGGAACAGCCAAGGGTATATTGTATCTTCATGAAGGTTGTCAAAGGAGAATTATCCACAGAGATATAAAAGCATCAAATATCTTGCTTACTGAGGCATTTGAGCCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACCCATCACACCGTTTCAAAAACTGAAGGGACTTTTGGTTACCTTGCTCCAGAATACTTGCTTCATGGGATAGTGGATGAAAAAACAGATGTTTTTGCATTTGGTGTGGTGCTATTAGAATTAGTCACCGGGCGAAGAGCACTTGATTATTCACAACAAAGCCTGGTTTTGTGGGCAGAACCTTTGCTGAAAAAGAATCATATTAGAGAGCTGATTGATCCGTCCCTTGCAGATGATTTCGACTGTCGGCAGATCAAAACTATGATCTTGACAGCTTCTTTGTGCATTCAACAATCCTCTATTTGTCGCCCATCTATGAGACAGGCACGTTTTCTTCTTTTGAATGGTGGTAACCTTAGCTGCTCCAGGTTCACCAAGAAATCTCAACTTCAATTATTTCGAAAAGACTTTCAGGAAGAGTTAATTGATTCTGATTAA 1221 0.4201 MEEEVDSPVGVLDDYFFQSSESETSSSKEPGTTDSDMSKPSSRWHAFLQLLRVKSKKPIATLHPLSVLKLSRRLSSGMRETIIDADSSLHRPPWKIFTHHEIQIATNYFAQENCIGKGGYAEVYKGCLPNGQLLAIKRLTRGAENETIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMHLVLELSEKGCLASVLNGSKEKLPWPVRQKIALGTAKGILYLHEGCQRRIIHRDIKASNILLTEAFEPQICDFGLAKWLPENWTHHTVSKTEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAEPLLKKNHIRELIDPSLADDFDCRQIKTMILTASLCIQQSSICRPSMRQARFLLLNGGNLSCSRFTKKSQLQLFRKDFQEELIDSD 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03254 406 ProSiteProfiles Protein kinase domain profile. 109 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03254 406 SMART serkin_6 109 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03254 406 PANTHER OS08G0249100 PROTEIN 6 402 IPR046958 -
Spst1g03254 406 SUPERFAMILY Protein kinase-like (PK-like) 89 372 IPR011009 -
Spst1g03254 406 Pfam Protein kinase domain 111 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03254 406 ProSitePatterns Protein kinases ATP-binding region signature. 115 137 IPR017441 GO:0005524
Spst1g03254 406 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 79 183 - -
Spst1g03254 406 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 186 390 - -
Spst1g03254 406 Gene3D Transferase(Phosphotransferase) domain 1 186 380 - -
Spst1g03254 406 MobiDBLite consensus disorder prediction 17 40 - -
Spst1g03254 406 Gene3D Phosphorylase Kinase; domain 1 71 183 - -
Spst1g03254 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Spst1g03254 406 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03254 Spst-Chr1 40991274 40993648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03254 97 374 Receptor kinase-like Gene Family AT1G53420 42.657 1.79e-67 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Spst1g03254 Pkinase 1.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03254 - - gmx:100787372 680.633