Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03252 ATGTCCCTTCCCTTTTATTTCTCCCTCTGTTTTCTTTGTTCTCTTTCATTTATTCTTCCTGTTCCTTCTCTGGGTGCCAACGACACCGTTCCATGTCCCTTGAACATCACGGTGCTCCGCGTGGTGGGCGGCGGCGCCCGTCCCTCATTCGACGCCGGCACTCAGTGCCATTACATCCTGCAGGCCCTGCATCTCCTCCAGGCGGACTACCTCCGCCGCAGCAGCTTCTTTGTGCCGCCGCTCAACGCCTCCGAGTCCTGCTGGGCCTCCTTCCAGTCCTTCATCAACGAATTCGACCCCAACATCGATATCCGCTCCTCCTGCGGTCTCCAAACCGCGTGGATCTCCCAAGGCTGCATGAACATCACCACCAAAAAGGAGTTCGAAGACACCGTCCCCACCGCCGCAATCCAAGCCGTCCAAGATAACTGCAACCAGTCCCTCGAGAACAACGCCCCTTGCGCCCTCTGCACCACCAAGCTCTCCAACCTTCTCTCCTACTTAACGGGCCCAACCGTCGGGAACGTCTCCGATTGCCGCGCCTATACCTCCATCTACGCCGCCTCTCTCTCTGACCAGTACGGTGCCACTGACCCTGGAACCGCCAAGTGCCTCTTCGGCCTCGATTTTTCCTCCTCCGGTTCCATCGGTAAGCGCCGAATCATTATTATCGTCGTTTCCGTTTTCTGTTTTGTGGCTTTGCTTGCTTTTGCCGGGGTTTGGACTTACGTTAGATTCAAGAAGAGGAAGGAGGTTGCGAGAGGGAAGGGTGTTGGAACATCTGAACTTGGTTTGGGTTCTCGGTTGGATTCCATAAACCAGAGTACGACTTTGATTAGGTTCACATTTGATGAGATTAAAAAGGCTACTAGGAACTTCTCCAGGGATAACATAATCGGGAGTGGGGGCTATGGGAATGTTTATAAGGGGGTGTTGTTGGATGGTAGCCAAGTTGCATTTAAGAGGTTCAAGAATTGTTCTGTTGCTGGGGATGCTAGCTTCACTCACGAAGTTGAGGTTATTGCGAGTGTTCGCCATGTGAATCTTGTTACCTTAAGAGGTTATTGTACTGCCACCACCAATTTAGAGGGCCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGGAGTCTTTATGATCATTTGTTTGGTTCTTCTAAGAAGAACCTCAGTTGGCCTACTCGTCAAAAGATTGCTCTTGGCACTGCTAGAGGGTTGGCTTATTTGCATTATGGGGCTCAACCTTCCATCATTCACAGGGATATTAAAGCTAGTAACATTCTTCTGGACCATAAGTTTGAAGCCAAGGTGGCGGATTTCGGGTTGGCGAAGTTCAACCCCGAGGGAATGACGCATATGAGCACTAGAGTGGCTGGGACTATGGGGTATGTTGCTCCTGAATACGCCTTGTATGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTATGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACGAACGATGATGGGCAACCCTCTGCACTCACTGACTTGGCTTGGTCGTTGGTTAGAAACGGTAGCGCTTTGGATGTTGTTGAAGATGGCATTCCAGAACCTGGTCCACCAGAAGTTCTTGAGAAGTATGTGTTGATTGCTGTGTTGTGTTCTCATCCACAGCTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGCTGGAGACAGATGAATCGGTTCCTTCGTTAATGGAAAGGCCAATTCCTTTTATTGCTGGGAGGATTGATATTGAGAAATCTGCGCTGAGTAACTCGGGTCAGCTCTGCAGTCCAACTGGTTATCAAGCATATACATTACAAAGTCGCGGCAGATCTGCCTCTAAAGAAGAAGAGGAAGAAGATGAAGGAAGTTCAGTGGCTGATACTGTTACCACGGAATGA 1920 0.4943 MSLPFYFSLCFLCSLSFILPVPSLGANDTVPCPLNITVLRVVGGGARPSFDAGTQCHYILQALHLLQADYLRRSSFFVPPLNASESCWASFQSFINEFDPNIDIRSSCGLQTAWISQGCMNITTKKEFEDTVPTAAIQAVQDNCNQSLENNAPCALCTTKLSNLLSYLTGPTVGNVSDCRAYTSIYAASLSDQYGATDPGTAKCLFGLDFSSSGSIGKRRIIIIVVSVFCFVALLAFAGVWTYVRFKKRKEVARGKGVGTSELGLGSRLDSINQSTTLIRFTFDEIKKATRNFSRDNIIGSGGYGNVYKGVLLDGSQVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKNLSWPTRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGKKALQTNDDGQPSALTDLAWSLVRNGSALDVVEDGIPEPGPPEVLEKYVLIAVLCSHPQLYARPTMDQVVKMLETDESVPSLMERPIPFIAGRIDIEKSALSNSGQLCSPTGYQAYTLQSRGRSASKEEEEEDEGSSVADTVTTE 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03252 639 CDD STKc_IRAK 299 568 - -
Spst1g03252 639 SMART serkin_6 293 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03252 639 MobiDBLite consensus disorder prediction 613 639 - -
Spst1g03252 639 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 137 628 - -
Spst1g03252 639 Gene3D Transferase(Phosphotransferase) domain 1 374 577 - -
Spst1g03252 639 ProSiteProfiles Protein kinase domain profile. 293 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03252 639 SUPERFAMILY Protein kinase-like (PK-like) 276 580 IPR011009 -
Spst1g03252 639 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 256 372 - -
Spst1g03252 639 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 374 575 - -
Spst1g03252 639 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Spst1g03252 639 Pfam Protein kinase domain 294 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03252 639 Gene3D Phosphorylase Kinase; domain 1 265 372 - -
Spst1g03252 639 Pfam SPARK 28 179 IPR043891 -
Spst1g03252 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03252 Spst-Chr1 40986551 40988470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03252 23 620 Receptor kinase-like Gene Family AT2G48010 62.086 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Spst1g03252 Pkinase 2.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03252 - - gmx:100786298 1065.83