Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03251 ATGTTGTGTCACAGCCACAAACTCCGAATGCCACTGCTCCCCATGCTTTTCACCATCTTCCTCACTCTCCCTACCCTTTCGCTCTCCGTTTCGTGTCCCCTCAACTTCACCCTCATCCGTTACAGACCCTCCTCGGATTCGGCCAAACGGTGCAATTACATCCTCCAAGCCCTTCGTACTCTTCAATCCGATTACCTCCACCGCACCGGTTTCTTTTCCCCTCCTTCCAACACTCACTTCTTCTGCTGGAACGCTCTCCAATCTTCCACCCAACAATATGATATTCGCTCCTCCTGCAACCTCCCTTCCTTTTCCATCTCCCTCTCCTGCAACAACATCACCAACCGATCCCAATTCCAGGACTCTCTTTCTCCCTCTGCTCTTAAGTCCGTGTGGAATGCTTGTAACCAATCTCTCAGCAGTGTTGTAGCTTGTGCTCTCTGCACCAAAGCTTTGTCCAACTTGGATTCCCACCTCACGGACAATACCGCTGATTGTAAGGCTGTTGCTTCTGTCTATGCTGCTTCCTTCTCCGATCTACAAGACCCCGAATCTGCTAAGTGTTTGTTCAACGATGGGTTATCTTCCTCGGGTTCAACTGGTAAGCGTCGAACCATTCTTATTGTGGTTTTTTGTGTGTTGGCCTTCTTCTTGTTGGTCTTTGGTGTTTTTCGGGCTTACGTTAGAATGAAGCAGAAGAAGAATGTTGGTAAAATTGTGATGGCTTTGGGTTTGGGCTCTGGGTTGGATTCTATGAACCAGAGTACTACTTTGATTAGGTTCACTTTTGATGAGATTAAAAATGCTACTAGGAATTTCGCTGGTGATAACATAATTGGGAAGGGGGGTTATGGGAATGTTTATAGAGGGATTCTGTTTGATGGGACTCATGTTGCGTTGAAAAGGTTTAAAAATTGTTCAGTTTCTGGCGATGCTAGCTTCACTCATGAAGTTGAGGTTATTGCGAGCGTTAGGCATGTGAACCTTGTTGCCTTGAGAGGGTATTGTACTGCTACAACTAATTTAGAGGGTCACCAGAGGATTATTGTCACTGAGTTGATGGAGAATGGGAGTGTTTATGATCATTTATTTGGTTCTGCTAAGCACAAACTCAGTTGGCCAATTCGTCAAAAGATTGCTTTAGGCACTGCAAGGGGGTTGGCTTATTTGCACTATGGGGCTCAACCTTCCATCATTCATAGGGATATTAAGGCTAGTAACATACTTCTGGACCACAAGTTTGAAGCCAAGGTAGCGGATTTTGGGTTAGCAAAGTTCAACCCTGAGGGAATGACGCATATGAGCACTAGAGTGGCTGGAACTAAGGGGTATGTTGCACCTGAGTATGCTTTGTATGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAGGGCTCTTCAAATGGACAATGATGGGCAACCCTCTGCACTCACTGACTTTGCTTGGTCATTGGTTAGGAATGGTAAAGCTCTTGACGTAATTGAAGATGGTATCCCAGAACTTGGTCCAATAGAAATTCTTGAGAAGTATGTGTTGGTTGCTGTACTATGTTGTCATCCACAACTATATGCTAGGCCAACAATGGACCAGGTTGTTAAAATGCTAGATACAGAGGAATCAGTGTCCTCATTAATAAAACAACCAATCTCTTGTATTGCCGGGAGGATTGATACTGAGAAATCTGAGTAG 1725 0.4493 MLCHSHKLRMPLLPMLFTIFLTLPTLSLSVSCPLNFTLIRYRPSSDSAKRCNYILQALRTLQSDYLHRTGFFSPPSNTHFFCWNALQSSTQQYDIRSSCNLPSFSISLSCNNITNRSQFQDSLSPSALKSVWNACNQSLSSVVACALCTKALSNLDSHLTDNTADCKAVASVYAASFSDLQDPESAKCLFNDGLSSSGSTGKRRTILIVVFCVLAFFLLVFGVFRAYVRMKQKKNVGKIVMALGLGSGLDSMNQSTTLIRFTFDEIKNATRNFAGDNIIGKGGYGNVYRGILFDGTHVALKRFKNCSVSGDASFTHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTELMENGSVYDHLFGSAKHKLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHKFEAKVADFGLAKFNPEGMTHMSTRVAGTKGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKRALQMDNDGQPSALTDFAWSLVRNGKALDVIEDGIPELGPIEILEKYVLVAVLCCHPQLYARPTMDQVVKMLDTEESVSSLIKQPISCIAGRIDTEKSE 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03251 574 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Spst1g03251 574 Gene3D Phosphorylase Kinase; domain 1 246 352 - -
Spst1g03251 574 Pfam Protein kinase domain 277 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03251 574 SMART serkin_6 273 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03251 574 CDD STKc_IRAK 279 548 - -
Spst1g03251 574 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 234 352 - -
Spst1g03251 574 ProSiteProfiles Protein kinase domain profile. 273 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03251 574 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Spst1g03251 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 398 410 IPR008271 GO:0004672|GO:0006468
Spst1g03251 574 Gene3D Transferase(Phosphotransferase) domain 1 354 561 - -
Spst1g03251 574 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 354 555 - -
Spst1g03251 574 SUPERFAMILY Protein kinase-like (PK-like) 250 547 IPR011009 -
Spst1g03251 574 Pfam SPARK 29 163 IPR043891 -
Spst1g03251 574 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 85 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03251 Spst-Chr1 40979138 40980862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03251 9 572 Receptor kinase-like Gene Family AT2G48010 56.186 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Spst1g03251 Pkinase 3.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03251 - - gmx:100819980 878.626