Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03223 ATGAGCTATCACATGAATAATGAGGATACACGCAGAGGTTTGAAAAGAAAGCCCCCATACATGGATCGAGGGCAAGAACGGGGACCTTACAATATGAATTCTAGACCTTATGACAGGAACATGGTTCCAGATGGTTGGTTTGACTGCCCAGCACATGGGCAAAAACTAGGACGCATAATCCCTTCGAAGGTTCCACTTGGTGAATCCTTCAATGATTACATTCCAAATGAAAAATATACTCCTACACAAGCTATTCATCAACAAAGAGTCTTAGGTCGAGAACTTGGTTTAGTGATTGATTTGACAAATACTACTCGTTACTATCCATTATCAGATTGGACAAAAGAAGGAATTGGTCATGTCAAGATAAGATGCAGGGGAAAAGATGCTGTGCCTGATGATGACTCTGTAAAAAAATTCTGTGATGAGTGCTTGATATCTTACTGGAGGTTTTATGATTTATACTTGTTAGATATTCGTTTTAGGTTCAAGATTTTTGCTCCCAAAGAAAAAATGAAAAGAAATATATACTTGTACATTGCACCCATGGGCATAATCGTACAGGCAATAAATAAATTTGCTTTGGCACGCCACCCAGGAATTTACAAGCAGGACTATATTGACGCCCTGTACATGTTTTACCATGAAAAAAAGCCGGAAGATCTTGTTTGTCCTCAAACCCCTGAATGGAAGAGAACTTCTGATCCTGATTATCATGGCACAACTGTTCCAGCTGTGGACAATTATGGACACATTCCAACACAGGAGAATATTGTGAGAAGTGAAGTATTGACAAATGATGATGTCTTGGGAGATCCAATTCCTCCAAATCAGCTCCGTGCCATGCAAGAAGTTTGTTATGAACTGCTCAAGTTAGGCACAGGGGGAAGAGGACGTTCGCAGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGAAAATCTGCAACTCTTGAGACAACGATATTACTATGCCACGTGGAAAGCTGATGGGACACGCTATATGATGCTGATTACTTGTGATGGATGTTATTTGATTGATAGAAAATTTCTTTTCCAAAGGATCAATATGCGATTTCCTTGCAGATATTCAAATGGGAGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACAGGGATCCACAAACCAATAAGCAAGAGAGAAGATACCTCATTTATGATTTGATGGCAATCAATCAGGTCTCTTTAACAGAGCTTCCGTTTTATGAAAGGTGGAAACTTCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGAGATGGCCTTTCAAAGAGTACAAATCCTTATTATAGATATGATTTGGAACCATTTAGTGTGAGGAGGAAGGGATTTTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAAATTTATTCCACAATTATCGCATTCATCAGACGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTCTTTGAGGTGGGAGCTGGGGATCGTCCCTTGCTTTTTCTGTTTGAACGTGGAAGGAAGAAGTTAATGGAGGAGAATGTTATTTTTAAAGATGCATCAGACATTTCTTCCTATTCAGGAAAGATCATTGAATGCTACTGGGATTCCGTGGGTCGTCATTGGGTCTGTATGCGGATCAGAATAGACAAAGCAACTCCAAATGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGATGTCTTACTGAATGAGATCAATGAGACAATTTGCCTACCCTTGTATGCCGACAGAATACAAAGGGATATCAAGGCTCACCAGCACATGGTCTCTTCTAGGCGCAATTCTCCGGGAATAGCATTGTATTTATGTCCTCAACGTTCCATCACCAACCACTGTTTCGTTATCTCCGTCCCGGAACCTTCCAAAATGCCTCTTCTGCCTCTCTGCAGCATGCTCTTCTTCTTTGCCTTCTTGCTCTTCCTCCCTCTGACACCCACATTCCAAATCCCGTTGGTAGCCCCAGTCTCAAAAGACCCCTCTACCCAACTCTACACCCTCTCCCTCTTCCTCAAAACCCCACTCCAGCACACCAAACTCCACCTCGACCTCGGTTCCTCCCTCGCCTGGCTCCTCTGCGACTCCACCTACAACTCCTCCTCCTCCCACCACATCCCCTGCAACGCCTCCCTCTGTGACTCCTTCCCCTCCAATGCCTGCTCCAACGACACGTGCGCCCTCTTCCCGGAAAACCCCCTCACAAGAACCACCCTTCTCGACACCGCCCTCGTCGACTCTCTCGCCCTTCCCACCTACGACACCTCCTCTCAGAGCCCACTCGTTCTCATTTCCGATTTCATCTTCTCCTGTGCAACGGCCCATTTGCTCCAAGGCCTCGCCACCAATGTGACCGGACTAGCCGCTTTGGGCCGGTCCAATTACTCCCTCCCGGCCCAAGTAAGTACGGCACTAAGTTCCCCGCGTTCTTTCTCTCTATGCTTGCCTTCTTCGTCCAACACAGGCGCAGCTATCTTCTCCTCCAACACCATCTCTTACTTTTTCTCTTCCAAAATTGAGCTCACTTACACACCCCTAATTCTAAACCCCGTCGCCGACACTGTCGTCACCCACAACTCACAACCGTCCGATGAGTATTTCATAAACCTCACCTCCATCAAGATCAACGGCAAAGCCCTTCCCATCAACGCCTCCATCTTAACCGTCGATCAAACCGGCTTCGGTGGGACCAAGATCAGCACTGCGGAGCCCTACACCGTTTTGGAAAGCTCCATTTACAAGTTCTTCGTCCAGTCTTTTGTCAACGAATCCTCCGCTTTTAACTTAACGGTGACGGAGGCCGTTGAGCCCTTTGGCGTGTGCTACCCTGCGGGAGACCTCACGGAGACCAGAGTGGGACCCGCGGTTCCGACCGTTGACCTGGTGATGCAGAGCGAGGACGTGTTTTGGAGAATCTTCGGGGGCAATTCGATGGTGAGGATTGAAAAGGGGGGAGTGGATCTGTGGTGCTTGGGTTTCGTGGATGGTGGGAGCCGTAGGAGGACGGGCGTGGTGATTGGAGGGCATCAATTGGAGGATAATGTAGTGCAGTTTGATCTTGACTCAAATAGATTTGGTTTCACCTCGTCTCTGTTGCTCCAGGGTGCCAAGTGTTCAGTTGGAGCCAAACCAACACAGCCTCTGAAAAACGTTCCTTCCAGTGGACAAATCCCGATGATGAGGCCAAAAGAGAAGGTGGTGTTGGTGATGGGAGCAACGGGGAGCGGGAAAACGAGGTTGTCGGTGGACCTAGCAACATGTTTTCCATCAGAAATCATAAACTCTGACAAAATGCAAGTCTACGAAGGGCTTGACATTGTCACCAACAAGGCCTCCAAAGAGGAGCAGCGTGGGATCCCACATCATCTGTTGGGGACACAGAACCCCAACATGGAGTTCAACGCCTCGGATTTCTGCGACGTGGCCTCACGCGCCATCGAGTCCATCACGCGCCGGGACAAGGTTCCGATAGTGGTGGGAGGGTCCAACTCGTACATGGAGGCGCTGGTGGAGAGGTTCGGTCCGAGGTTTGAGTGGTGCTTTCTGTGGGTCGACGTGTCCATGCCTGTGCTCCATTCCTACGTGGCGCGGCGCGTGGACGACATGCTCGGTGGCGGAATGGTGAACGAGTTGAGACCGTTTTTCAACGTGAACGGGGATTACTCGCGAGGGATTCGGAAGGCCATTGGGGTGCCGGAATTCGACGCGTATTTCCGGCGGGAGGGGGTGGCAAGCGGCGAGACGCGGATGAGGCTGCTTCAGGAGGCGGTGATGGACGTGAAGAGGAACACGTGTCACTTGGCATGCAAGCAACTTGGGAGAATCCACATGCTCCGAAGTGTTAAGGGGTGGAAGATCCACCGCGTTTGCGCCACGTCGGTGTTTCAGAAAAGTGGGCACGAGGCGAATGAGATGTGGAAGAACATGGTGGCGCAACCTTGCGCCTCCATTGTTTCTCAGTTTCTCTATAGTTCTTCCCATGCTGCTTCTGAGAGACTCACGTAA 4119 0.4812 MSYHMNNEDTRRGLKRKPPYMDRGQERGPYNMNSRPYDRNMVPDGWFDCPAHGQKLGRIIPSKVPLGESFNDYIPNEKYTPTQAIHQQRVLGRELGLVIDLTNTTRYYPLSDWTKEGIGHVKIRCRGKDAVPDDDSVKKFCDECLISYWRFYDLYLLDIRFRFKIFAPKEKMKRNIYLYIAPMGIIVQAINKFALARHPGIYKQDYIDALYMFYHEKKPEDLVCPQTPEWKRTSDPDYHGTTVPAVDNYGHIPTQENIVRSEVLTNDDVLGDPIPPNQLRAMQEVCYELLKLGTGGRGRSQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITCDGCYLIDRKFLFQRINMRFPCRYSNGSTPERNHHYTLLDGEMIIDRDPQTNKQERRYLIYDLMAINQVSLTELPFYERWKLLEKEVIEPRNMERDGLSKSTNPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFEVGAGDRPLLFLFERGRKKLMEENVIFKDASDISSYSGKIIECYWDSVGRHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEDVLLNEINETICLPLYADRIQRDIKAHQHMVSSRRNSPGIALYLCPQRSITNHCFVISVPEPSKMPLLPLCSMLFFFAFLLFLPLTPTFQIPLVAPVSKDPSTQLYTLSLFLKTPLQHTKLHLDLGSSLAWLLCDSTYNSSSSHHIPCNASLCDSFPSNACSNDTCALFPENPLTRTTLLDTALVDSLALPTYDTSSQSPLVLISDFIFSCATAHLLQGLATNVTGLAALGRSNYSLPAQVSTALSSPRSFSLCLPSSSNTGAAIFSSNTISYFFSSKIELTYTPLILNPVADTVVTHNSQPSDEYFINLTSIKINGKALPINASILTVDQTGFGGTKISTAEPYTVLESSIYKFFVQSFVNESSAFNLTVTEAVEPFGVCYPAGDLTETRVGPAVPTVDLVMQSEDVFWRIFGGNSMVRIEKGGVDLWCLGFVDGGSRRRTGVVIGGHQLEDNVVQFDLDSNRFGFTSSLLLQGAKCSVGAKPTQPLKNVPSSGQIPMMRPKEKVVLVMGATGSGKTRLSVDLATCFPSEIINSDKMQVYEGLDIVTNKASKEEQRGIPHHLLGTQNPNMEFNASDFCDVASRAIESITRRDKVPIVVGGSNSYMEALVERFGPRFEWCFLWVDVSMPVLHSYVARRVDDMLGGGMVNELRPFFNVNGDYSRGIRKAIGVPEFDAYFRREGVASGETRMRLLQEAVMDVKRNTCHLACKQLGRIHMLRSVKGWKIHRVCATSVFQKSGHEANEMWKNMVAQPCASIVSQFLYSSSHAASERLT 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03223 1372 Pfam IPP transferase 1137 1211 - -
Spst1g03223 1372 Pfam IPP transferase 1214 1310 - -
Spst1g03223 1372 Gene3D DNA ligase/mRNA capping enzyme 265 504 - -
Spst1g03223 1372 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 1226 1324 - -
Spst1g03223 1372 Pfam Xylanase inhibitor N-terminal 704 864 IPR032861 -
Spst1g03223 1372 Gene3D Acid Proteases 686 865 IPR021109 -
Spst1g03223 1372 MobiDBLite consensus disorder prediction 1 34 - -
Spst1g03223 1372 FunFam Adenylate isopentenyltransferase 5, chloroplastic 1226 1324 - -
Spst1g03223 1372 Pfam mRNA capping enzyme, C-terminal domain 540 602 IPR013846 -
Spst1g03223 1372 CDD Adenylation_mRNA_capping 277 505 IPR001339 GO:0004484|GO:0005524|GO:0006370
Spst1g03223 1372 PANTHER MRNA-CAPPING ENZYME 37 606 - -
Spst1g03223 1372 MobiDBLite consensus disorder prediction 8 23 - -
Spst1g03223 1372 Gene3D Protein tyrosine phosphatase superfamily 184 242 IPR029021 -
Spst1g03223 1372 Gene3D - 1101 1360 IPR027417 -
Spst1g03223 1372 Gene3D - 505 596 IPR012340 -
Spst1g03223 1372 SUPERFAMILY Acid proteases 696 1070 IPR021109 -
Spst1g03223 1372 FunFam mRNA capping enzyme, putative 265 502 - -
Spst1g03223 1372 SUPERFAMILY Nucleic acid-binding proteins 507 618 IPR012340 -
Spst1g03223 1372 FunFam Basic 7S globulin 868 1081 - -
Spst1g03223 1372 Pfam Xylanase inhibitor C-terminal 903 1066 IPR032799 -
Spst1g03223 1372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1104 1216 IPR027417 -
Spst1g03223 1372 Gene3D Acid Proteases 868 1079 IPR021109 -
Spst1g03223 1372 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 287 505 - -
Spst1g03223 1372 ProSiteProfiles Peptidase family A1 domain profile. 704 1066 IPR033121 -
Spst1g03223 1372 Gene3D Protein tyrosine phosphatase superfamily 20 150 IPR029021 -
Spst1g03223 1372 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 144 IPR029021 -
Spst1g03223 1372 CDD xylanase_inhibitor_I_like 710 1069 IPR033868 -
Spst1g03223 1372 Pfam mRNA capping enzyme, catalytic domain 306 504 IPR001339 GO:0004484|GO:0005524|GO:0006370
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03223 Spst-Chr1 40741351 40759054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03223 31 624 Protein tyrosine phosphatase (PTP) family AT3G09100 58.101 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03223 K13917 - vra:106758011 1133.63