Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03217 ATGGCTGCACCGCCAAATAGCAGGCTTCAAAGCATGTTAAGGGCTGCAGTTCAATCAGTTCAGTGGACTTACAGCCTCTTCTGGCAACTTTGTCCTCAACAAGGGATTTTGACGTGGGGTGATGGATACTACAATGGAGCAATTAAGACTAGGAAGACAGTTCAAGCAATGGAAGTTAGCACTGAGGAAGCGTCTCTGCAAAGAAGCGAACAACTTCGAGAGTTATATGAATCTTTGTCTGCTGGAGAAACAAACCCGCAAACTCGAAGACCATGTGCTTCTTTGTCTCCTGAGGATCTAACGGAATCAGAATGGTTCTATCTGTTGTGTGTCTCTTTCTCCTTTCATCCTGGTGTCGGATCACGACGCTTGACTACATTGTTGCCCGGAACAGCATATGCCAGGAGGCAGCATCTATGGCTCACTGGTGCAAACGAAGTAGACAGCAAAACATTTTCCAGAGCTATTCTTGCCAAGACAGTGGTGTGCATTCCTGTGTTGGAGGGCGTGGTTGAGTTGGGCACAACCGACAAGATGGAAGAAGACCTAAATTTCATCCAACACATAAAGAGTTTCTTCATAGATCAGCACTCTCCGACGGCAAAGCCTGCACTGTCAGAGCACTCCACCTCCAATCCCACTTCTTCTTCATACCCTGTTGTCGTCACTGCCACTGCTGCACCGCCCAGCAATATTCCCAACCAAAACGACATGAACGTGGTTGATAAAGGAGAAGAAGTTAAGTTGAATTCCGAACCAGGATTGGTAGTTCGTAACAGTTTCTTACCGACCGAACTAATGGAGCTGGACACGTTAGAGGGGTTTCGGGTCGGGTCTCCCGGAGATGGCTCCAACCACTTGGATTCCTTCCCCACGGAGGAATCCATGGCACTGTGTTCTGCAGGCTTGGAACTTCTTCAGCTTCAACTACCACCACAACCTCCAGGAATATCATTGAGAAAGTTTGATCTGGGGTGCCTTAAAGAAGAGGATTTGAACTATATTACCCTCAAAATCTCACCCACATCGCACTGTGGTGCGTTTCGCACTCAAGAAAACCATTCTTCCCTTTCGATCTGTGCCCCAATATGCTCATTGAAACATCCTCCCTCAGAAAACATAGCACAAGGCGAGACAGACACCCACTACTCGCAGACAGTATCCAGCATCCTACAAAAGAACTCCGGGTGGTGGCCGGAATCACCCTCCGTCAACCACCTCACTGATTCCTTCCAATCAGCTTTCAATAAATGGAACTCCGGCACCGACGACTACCACGGCCACTTCCACATGACGGTGGCGGACGTCACCTCTCAGTGGCTCCTCAAGTACATTCTCTTCAGCGTTCCTTACCTGCACGCCAACCGGCTAAAGGGAAAAGGAGCCGCGCAATACGAGACCAGCCACGTTATGGCGGAGCGCCGCCGGAGGGAGAAGCTGAATGAGAGGTTTCTCATTTTGCGTTCGTTGGTGCCTTTTGTAACCAGAATGGACAAAGCATCGATTCTGGGTGACACCATTGAATACATAAAACAGCTGCGGGAGAAGATTGAGAGCTTGGAGAGACATGAGCGGCATGCGGGGAAGAGGAGGGCGAGGGAGGTGGAGGTTTCAATCATAGAGAGCGATGCACTGTTGGAGATGGAGTGTGTGCATAGGGAAGGGTTGTTGCTGGATGTGATGACATTGTTGAGGGAGTTAGGGGTGGAAGTAATGATGGTGCAGTCGTGGGTTAAGGATGATGGAGTGTTTGTGGCGGAGATGAGGGCCAAGGTCAAAGAAAATGGTGACGGGAAAAAGGCAAGTATTGTGGAGGTGAAGAATGCCCTAAACCATATTGTACCCCATCATATTCCCCACCATGATCCATACACACTGCCTTCCAATGATCATTTTTAA 1899 0.4903 MAAPPNSRLQSMLRAAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSAGETNPQTRRPCASLSPEDLTESEWFYLLCVSFSFHPGVGSRRLTTLLPGTAYARRQHLWLTGANEVDSKTFSRAILAKTVVCIPVLEGVVELGTTDKMEEDLNFIQHIKSFFIDQHSPTAKPALSEHSTSNPTSSSYPVVVTATAAPPSNIPNQNDMNVVDKGEEVKLNSEPGLVVRNSFLPTELMELDTLEGFRVGSPGDGSNHLDSFPTEESMALCSAGLELLQLQLPPQPPGISLRKFDLGCLKEEDLNYITLKISPTSHCGAFRTQENHSSLSICAPICSLKHPPSENIAQGETDTHYSQTVSSILQKNSGWWPESPSVNHLTDSFQSAFNKWNSGTDDYHGHFHMTVADVTSQWLLKYILFSVPYLHANRLKGKGAAQYETSHVMAERRRREKLNERFLILRSLVPFVTRMDKASILGDTIEYIKQLREKIESLERHERHAGKRRAREVEVSIIESDALLEMECVHREGLLLDVMTLLRELGVEVMMVQSWVKDDGVFVAEMRAKVKENGDGKKASIVEVKNALNHIVPHHIPHHDPYTLPSNDHF 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03217 632 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 525 IPR036638 GO:0046983
Spst1g03217 632 PANTHER TRANSCRIPTION FACTOR TT8 3 615 - -
Spst1g03217 632 SMART finulus 470 519 IPR011598 GO:0046983
Spst1g03217 632 Pfam Helix-loop-helix DNA-binding domain 467 514 IPR011598 GO:0046983
Spst1g03217 632 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 464 513 IPR011598 GO:0046983
Spst1g03217 632 Gene3D - 458 529 IPR036638 GO:0046983
Spst1g03217 632 Coils Coil 503 530 - -
Spst1g03217 632 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 193 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03217 Spst-Chr1 40678018 40686883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03217 382 616 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 47.154 3.16e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g03217 bHLH-MYC_N 1.7e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03217 - - gmx:100780422 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03217 1 40678018 40686883 Spst1g03217 1 40678018 40686883 ECH