Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03204 ATGGCTGCAAATGAGGTACGCGGCATGTCCTTTGGAAACTCACTGGAAACTTCTTTGCTCTCGCCGCCGACAGGTCTCACTTCCGCAAGAAGCTTGAAGCGCAAGCTCCAAGGAGATTTAACCCAGGACCAGACCGATTCCGAGGCAGAGATTCTCCAACAGGTTTCTCTCCTCAATTCCACTCTTCTATCCTCTGCCCCGGACTGCGCTACTATCAAGAATGCTATCCACAGCCTCTCTGTATTCGCTGGAAACGAGGAACTCGTGGATACTATACTGAATTGCGGTGCTATCCCTGCTTTGATGAGACATCTTCCATTGCCAGATGCACGGAAAGATGACAGTAATGAGGCATATGCATTGGAAGATGATAATGATGGAGTTACCGAACATGATCAGTTTGAGGTGGTCACAGGATGTACGATTCTCCTTCAGCTTCTTGCCATCAAACAAGCATATATTCGGGAACTTATTGTACGTTCCGGAGCCTTGCCCTGTCTAGTAAATTCTTTAAAGAGGCACAAGATCAGTACTATTTCTCGACCACTTGTTGAACTTCTAAAGAGAGCAGCCGATGCAATAACCACCTTAGCTCATGAAAATACTGACATCAAGACTTATGTCAGGATGGAAGGTGGTATACCTCCTATTGTTGAATTGCTTGAATTCAACGATATAAAGGTTCAGAGAGCAGCTGCACGGACTTTGCGAACTCTTGCTTTTAAAAATGACGGCAACAGAAATGAGATAGTTGAATGTAATGCATTACCAAATCTTGTATTAATGCTTGGATCAGAGGATTCTAAATTACACTGTGAGGCGCTTTTTGTGATTGGAAATCTGATCCACTCTTCGCCAAATACTAGGAAAGATGTTCTTTTAGCTGGTGCTTTACAACCGGTCATTTGTTCACTTAGTTCCTCCTGTTCAGAGAGCAGAAGAGAAGCAGCCCGTTTACTTGGTCAGTTTACCACAACAGATTCCGATTGCAAGGTTCATATTTCCCAAAGAGGGGCTATTCCACCATTAGTTGATATGCTTAAGTCTCCGGATGCCGAGCTTCAGGAAATGTCAGCTTTTGCACTTGGGAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGCTCAAAGCGGAGGTGTGGAGCCTCTGCTCAAACTTCTTGACTCAAACAACGCACCAGTGCAACAAAAAGCTGTTTTTGTTCTCTATGGTCTCGCTAATAATGAGGACAATGTTGTGTGCATTATTAAGGCTGATGGTTTTCAAAGACTGAAGGATGGAAATTTCGATAATCAAGTGTTGAAACACCTATTACATCTTATGTGCTACCCTGAAGAAGGGGTTCAAAGACGTGTAGCTATTGTTCTTGCATATTTATGTTCTCCCCGTGATAGTAAAACTATATTCATTGACAATAATGGATTAAATTTGCTGCTGGATATTCTCAAATCTCCAAATGTAAAGCAGATGGGTGACGCGTCGGCCGCACTTCTCAGATTGGCTGCCAAAACCCATTCTTCTGTTATCTCCCATTTGGAAATTACTACTCCATCATCCCAGATATACTGGGGTGAGGAATATGTAAACAATCCTAAACTTTCTGACGTCACATTCCTGGTTGAAGGTAGAAGTTTTTATGCTCATAAAGATTGTTTAGTTTCTTCGGACATATTTCGTGCTATGTTTGATGGCAGTTATAGGGAAGGAGAAGCAAAATATGTAGCGATTCCAAATATTAAATGGGATGTCTTTGAATTAATGATGAGATTTATATACACTGGAACGATTGATGTCAATTTGGATATTGCTCAAGATCTCCTCAAAGTGGCAGATCAGTATCTTCTGGACGACCTTAAACGTGATTGTGAATGTGCTATTGTTCAGGTATTGTCCCCTGGTGCATCACTTTATACCCGAGTTACGTATGTTCTTATCAACTTTACTAATCAAGTCTCATCCAGCGGACTGGTTTCTCTCCTCCATTCCGCTGCTTCGGACTTTGATACAGTTAAGAGGACTATGTACAACCTCAGTGTGCTCGCTCAAAATGAGGATCTTGCGGACACTTTTCTTGATTGCGGGGTTGCTCATGCTCTGGCGAGGCATCTTCAACTTCCAGATTACAGTGGCCATGGAGTTACTGAGCTTGACAAGTTTGACGTGGCCAAAAGATGCGCGCTCATTATTGAGTTTCTCGCCATCAAACAAGAATATCAGGAACTCATTGTACGTGCTGGAGTCTTGCCTTGTCTTGTAGAGTGTTTAAAGAGACACAAGATCTGTACTACTTCTCAACAACTTTGTAATCTTCTAAGGAGAGCAGCTGATGCAATAACGAGCTTAGCCCATGAACATACTGACATCAAGACCTGTGTCAGGATGGAAGGTGGTATACCTCCTCTTGTTGAATTGCTTGAATGGAATGATATTAAAGTACAGAGAGCAGCTGCACGGGCTTTGCGAACTCTTGCATTTAAAAATGATGGCAACAAAAATCAGATAGTTGAATGCGATGCCTTACCCACTCTTGTGCTAATGCTTGGATCAGAGGATTCTAAAATACATTATGAGGCTATTGGTGTGATTGGAAATCTGGTCCACTCTTCGCCAAATATTAAGAAAGATGTTCTTCTGGCTGGTGCTTTACAACCTGTCATTTGTTCACTTAGTTCCTTTTGTTCGGAGAGTCGAAGAGAAGCCGCCCTTTTACTTGGTCAGTTTGCCACAACAGATTCAGATTGCAAGGCTCATATTGCCCAAAGAGGGGCTATTCCACCATTAGTTGATATGCTTAAGTCTGCAGATGCCGAGCTTCAGGAAATGTCATCTTTTGCACTTGGAAGGTTGGCACAGGACTCTCATAATCAAGCTGGCATTGCTCAAAGTGGAGGTATAGAGCCTCTGCTCCAACTTCTTGACTCAAATATAGCGCCTGTCCAACAAAATGCCGTTTTTGCTCTCTATGGTATTGCCGATAACGAGGACAATGCTGTATATATTATTAAGGCTGATGGTTTTCAAAGACTGAAGGCTGGAAATTTCGAAAATCAATGGGTTTTCTTGTCATTGTCACTTAACTGGCAGCAAACTGTAGAGTGTGCAGTGAAGACTTTAAAAAGATTAGAGGAAAAGATTCAAGGGAGAGTGTTGAAACACCTTATACGTCTTATGTGCTACTCTGAAGAAATGGTTCAAAGGCGTGTTGTTATTGCGCTTGCATATTTATGTTCTCCTCGTGATAGTAAAGCTATATTCATTGACAATAAAGGATTAAATTTGCTGCTGGATATTCTCAAATCTCCAAACACAAAGCAGATGGGTGATGCTTCAGCTGCGCTTCACCAATTGGCTGCCAAAGCTCATTCTTCGGTTGTCTCCCTTCTTGAACGTGTTCCTTCATCACCAAGTCCTCAGATGTCCTTGGGCAAGGAATATGTAAACAATGCTAAACTTTCTGACGTTACATTCGTGGTTGAAGGTAGAAGTTTTTATGCTCATAGAGTTTGTTTAGTTTCTTCGGACATATTTCGTGCTATGTTTGATGGCAATTATAGGGAAAGGGAAGCAGAACATATAGTGATTCCAAATATAAAATGGGATGTTTTTGAATTGATGATGAGATTTATATATACTGGAACGGTAGATGTCAATGTGGACGTCGCTAAGGATCTTCTTAGAGCGGCAGATCAGTATCTTCTGGACGGCCTTAAGCATATTTGTGAAAAGGCTATTGTTAAGGAAATTTCAGTGGAAAATGTTGCGCCACTGTATAAGATATCCGAGGATTTCAATGCTACTAGATTAAGACATGCATGCATACTGTTTATGATGGAGAAATTTGATCAACTGAGATTTGAACCATGGTTTCGTCCCCTGTCGCATACAACAGTGATGAGTGTTCAGCTATCAGGTTTATGGGTCCCCAACTCTCCACCAATTCCCCCACAGTTCGTTTCCAACCGTGGCAGATTCTCCGCATCAGCTCTCTCGTCCCAATCCCCCACTATTCAGGCAACCCTTTTCACTCAACTCTCTATCTTTTTCCAATACACTTTCACCTCCCGAGATTACATCTTGTGGCCTTTGTTATTTATAATTGGTGTGGGAGGCCCCAGTTGGAGGGATAATGGATATGGCAATCCCAACGACAACTTATTTGATGGGTCTCAAGGAGAGAGTGATCATTGGAGCGACCTTGACTCTGATCTTTATCACTGGACAAAGACATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCAGGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCCATATCCACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATTTTGGTTTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTACTAGAAATGGCACAAAGGCTGTCTTCTCCAATGGAAAGCTTGGAATGGGAACAATGAAGCTAGGTCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATATTAAGCGTAGAGCCAAAGGGCTGCTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAACGTTGGTAAATCATCTTTAATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCCAGGCCTGGAGTCACAAGAGAATTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGATTCTCCTGGAATACTCCCAATGCGAATCAGTGATCAGTCAGCTGCTATAAAACTCGCCATATGTGATGACATTGGAGAGAGGTCTTATGATGTGGCTGATGTTGGTGCAATTCTTGTGCAGATGCTTACAAAGCTCCCCACAGTAGGTGGAGATACTCTTCGTAAACGATACAAGATTGATGTAGATAGTCAATGTGGTAAAATGTTTATAGAGAAGCTTGCGGTTCGAGTATTTAATGGAGATGTTAATCAAGCAGCATTTCGAGTCCTAGCAGATTTTAGAAAAGGAAAGTTTGGTTGGACTGCACTGGAGAGGCCCTCTAGGTGA 5073 0.4244 MAANEVRGMSFGNSLETSLLSPPTGLTSARSLKRKLQGDLTQDQTDSEAEILQQVSLLNSTLLSSAPDCATIKNAIHSLSVFAGNEELVDTILNCGAIPALMRHLPLPDARKDDSNEAYALEDDNDGVTEHDQFEVVTGCTILLQLLAIKQAYIRELIVRSGALPCLVNSLKRHKISTISRPLVELLKRAADAITTLAHENTDIKTYVRMEGGIPPIVELLEFNDIKVQRAAARTLRTLAFKNDGNRNEIVECNALPNLVLMLGSEDSKLHCEALFVIGNLIHSSPNTRKDVLLAGALQPVICSLSSSCSESRREAARLLGQFTTTDSDCKVHISQRGAIPPLVDMLKSPDAELQEMSAFALGRLAQDSHNQAGIAQSGGVEPLLKLLDSNNAPVQQKAVFVLYGLANNEDNVVCIIKADGFQRLKDGNFDNQVLKHLLHLMCYPEEGVQRRVAIVLAYLCSPRDSKTIFIDNNGLNLLLDILKSPNVKQMGDASAALLRLAAKTHSSVISHLEITTPSSQIYWGEEYVNNPKLSDVTFLVEGRSFYAHKDCLVSSDIFRAMFDGSYREGEAKYVAIPNIKWDVFELMMRFIYTGTIDVNLDIAQDLLKVADQYLLDDLKRDCECAIVQVLSPGASLYTRVTYVLINFTNQVSSSGLVSLLHSAASDFDTVKRTMYNLSVLAQNEDLADTFLDCGVAHALARHLQLPDYSGHGVTELDKFDVAKRCALIIEFLAIKQEYQELIVRAGVLPCLVECLKRHKICTTSQQLCNLLRRAADAITSLAHEHTDIKTCVRMEGGIPPLVELLEWNDIKVQRAAARALRTLAFKNDGNKNQIVECDALPTLVLMLGSEDSKIHYEAIGVIGNLVHSSPNIKKDVLLAGALQPVICSLSSFCSESRREAALLLGQFATTDSDCKAHIAQRGAIPPLVDMLKSADAELQEMSSFALGRLAQDSHNQAGIAQSGGIEPLLQLLDSNIAPVQQNAVFALYGIADNEDNAVYIIKADGFQRLKAGNFENQWVFLSLSLNWQQTVECAVKTLKRLEEKIQGRVLKHLIRLMCYSEEMVQRRVVIALAYLCSPRDSKAIFIDNKGLNLLLDILKSPNTKQMGDASAALHQLAAKAHSSVVSLLERVPSSPSPQMSLGKEYVNNAKLSDVTFVVEGRSFYAHRVCLVSSDIFRAMFDGNYREREAEHIVIPNIKWDVFELMMRFIYTGTVDVNVDVAKDLLRAADQYLLDGLKHICEKAIVKEISVENVAPLYKISEDFNATRLRHACILFMMEKFDQLRFEPWFRPLSHTTVMSVQLSGLWVPNSPPIPPQFVSNRGRFSASALSSQSPTIQATLFTQLSIFFQYTFTSRDYILWPLLFIIGVGGPSWRDNGYGNPNDNLFDGSQGESDHWSDLDSDLYHWTKTLRPVQWFPGHIAKAEKELKEQLRLMDVVIEVRDGRIPISTSHPQMDLWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKAVFSNGKLGMGTMKLGRLAKELAADVNIKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVGAILVQMLTKLPTVGGDTLRKRYKIDVDSQCGKMFIEKLAVRVFNGDVNQAAFRVLADFRKGKFGWTALERPSR 1690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03204 1690 Pfam 50S ribosome-binding GTPase 1534 1593 IPR006073 GO:0005525
Spst1g03204 1690 Gene3D - 180 302 IPR011989 -
Spst1g03204 1690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 338 380 IPR000225 GO:0005515
Spst1g03204 1690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1420 1600 IPR027417 -
Spst1g03204 1690 ProSiteProfiles BTB domain profile. 535 601 IPR000210 GO:0005515
Spst1g03204 1690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 923 965 IPR000225 GO:0005515
Spst1g03204 1690 MobiDBLite consensus disorder prediction 10 26 - -
Spst1g03204 1690 Pfam BTB/POZ domain 1145 1247 IPR000210 GO:0005515
Spst1g03204 1690 Pfam BTB/POZ domain 527 628 IPR000210 GO:0005515
Spst1g03204 1690 Gene3D - 39 179 IPR011989 -
Spst1g03204 1690 CDD YlqF 1416 1587 - -
Spst1g03204 1690 NCBIfam ribosome biogenesis GTPase YlqF 1414 1686 IPR019991 -
Spst1g03204 1690 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 657 1301 IPR044282 -
Spst1g03204 1690 ProSiteProfiles BTB domain profile. 1153 1219 IPR000210 GO:0005515
Spst1g03204 1690 SUPERFAMILY ARM repeat 657 772 IPR016024 -
Spst1g03204 1690 Gene3D - 892 1140 IPR011989 -
Spst1g03204 1690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 797 832 IPR000225 GO:0005515
Spst1g03204 1690 SMART E-Z type HEAT repeats 895 935 IPR004155 -
Spst1g03204 1690 SMART E-Z type HEAT repeats 811 851 IPR004155 -
Spst1g03204 1690 SMART E-Z type HEAT repeats 310 350 IPR004155 -
Spst1g03204 1690 SMART E-Z type HEAT repeats 352 391 IPR004155 -
Spst1g03204 1690 SUPERFAMILY ARM repeat 62 174 IPR016024 -
Spst1g03204 1690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 247 IPR000225 GO:0005515
Spst1g03204 1690 SUPERFAMILY ARM repeat 772 1128 IPR016024 -
Spst1g03204 1690 Gene3D - 1414 1587 IPR027417 -
Spst1g03204 1690 SUPERFAMILY POZ domain 1132 1247 IPR011333 -
Spst1g03204 1690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 839 881 IPR000225 GO:0005515
Spst1g03204 1690 Gene3D - 640 766 IPR011989 -
Spst1g03204 1690 MobiDBLite consensus disorder prediction 1 26 - -
Spst1g03204 1690 SUPERFAMILY POZ domain 526 627 IPR011333 -
Spst1g03204 1690 Pfam Armadillo/beta-catenin-like repeat 912 950 IPR000225 GO:0005515
Spst1g03204 1690 Pfam Armadillo/beta-catenin-like repeat 828 867 IPR000225 GO:0005515
Spst1g03204 1690 Pfam Armadillo/beta-catenin-like repeat 790 825 IPR000225 GO:0005515
Spst1g03204 1690 Pfam Armadillo/beta-catenin-like repeat 327 366 IPR000225 GO:0005515
Spst1g03204 1690 Pfam Armadillo/beta-catenin-like repeat 203 240 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 736 784 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 285 325 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 1079 1119 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 463 503 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 243 283 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 870 910 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 786 826 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 368 408 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 828 868 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 327 367 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 912 952 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 1037 1078 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 85 149 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 201 241 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 953 993 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 150 199 IPR000225 GO:0005515
Spst1g03204 1690 SMART arm_5 422 462 IPR000225 GO:0005515
Spst1g03204 1690 Gene3D Potassium Channel Kv1.1; Chain A 1143 1285 IPR011333 -
Spst1g03204 1690 Gene3D - 303 517 IPR011989 -
Spst1g03204 1690 Gene3D - 767 891 IPR011989 -
Spst1g03204 1690 Gene3D - 1592 1680 IPR023179 -
Spst1g03204 1690 FunFam Mitochondrial GTPase 1 1592 1680 - -
Spst1g03204 1690 SUPERFAMILY ARM repeat 185 502 IPR016024 -
Spst1g03204 1690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 379 421 IPR000225 GO:0005515
Spst1g03204 1690 SMART BTB_4 535 631 IPR000210 GO:0005515
Spst1g03204 1690 SMART BTB_4 1153 1249 IPR000210 GO:0005515
Spst1g03204 1690 FunFam DAR GTPase 3 chloroplastic 1414 1587 - -
Spst1g03204 1690 Gene3D Potassium Channel Kv1.1; Chain A 519 633 IPR011333 -
Spst1g03204 1690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 964 1006 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03204 Spst-Chr1 40553839 40575858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03204 733 935 U-box Gene Family AT1G23030 28.641 6.16e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Spst1g03204 MMR_HSR1 3.6e-14 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03204 - - zof:122043815 1194.1