Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03188 ATGAAAACGGAACCAGTGAAGGAAACCTTGAATTTAACCAATGGGAGGAAGAGATCTGCTGCAGTGATGGAAAGTGAGGTGGGTGAAAATGTTTTATGTAAGACAGAATCCTCATTGAATCTCGAGTTGACTCTGGGGGGTTACCGGATGGAACAAACTCCCCAAAGAGTCAATAGGAATGCGATTGAGCAGAAGCAATTGGGTAACCGTGAAGTGAAAGTTGAAGAAAATGTGAACCCTTCTAATGATAAGGTTTTGGCGCTGGAATTCATTGCCAGACTACAACGCCGCTCCAGAAGTTTCAGACGCTTAAGGAAGATACATGGTGTGGATGTGAAGAATGAACCTGAGGATATATGCCCAAGAAGATTGGTTAAGGATGAAGTGGTAGAAGATTGGGAGAATGAGGAGAAGGTTGCGGTGAATGAGAACAATGGTGTGTTCGTGGAGGAAAGGCGCGTAAATGCCCTTGAAATGTTAAGAGAAGAACATGAAAGAAATAAGAGGATAGTTGAAAACCTGAACACAGGAAAGCGAACTGTGCTTTCGTGGATGATTGATGTGAAGACACTGAAATCACGAGAGAGGGTTTATTACATGGATCACAAGAGCAAACAAGCATCACTCGGTGGAGCTGTGGTTAGAGATGGCATTCTGTGTGACTGTTGTTCTGAAGTTGTGTCCATTTCTGAGTTTGAATTTCACTCATGGAGACAAGACTTCTCTCCAGGGTTGAAAAGATCTGACCCACTGCGCAACATATGTTTGGCCAGGGGAAGAGGACTTTGTCTCTTGCAATGCATGGCAGAGGCCTGGGAAAAGGAAGAGGAATCTACTGGTAACTTCTATAACTTGATTCCTGTTAATGGACAAGAAAAAAACGACGATACTTGTATTCTCTGCTGGGAAATGGGAGACCTCACTTGTTGCGATGGTTGCCCATCAACTTTCCATCAAGACTGCCTGGGTATTCAACCAAACTTTGAGTATATGCATTTCCAGCGGGTCGTTGGTACTGTACGAACTGCTGTTGCAAATTTTGTGGGTTGTTTTGTGGAAGTTCTGAAGGTTTTGTCCACTTTCGGATATCGGCCATATGCCGTTTATGCGAGAAAAGATGTATATCACATATCCTGTCTTCAGGCCAATGGAGGCAATGTTGCTCTTGCTCAAGATGCATCCTTTTGTGGAAATGGATGTAAGGAGATATATGAGAAACTTGGACATCTGCTTCGGGTTAAGCATTATATGGAAGGTGGATTTTCTTGGTCTTTTCTTTACCGGTCAGAGGTTGACTCTAAAGCTCTAATGATAGATAGTCGTTTGGCTGAATGCAATGCAAAACTGGGTGTTGCATTATCTGTACTGAATCAGAGCTTCATGCCATTCAACGAAGAGGAAATCGGGGTTGATATAATGCGAAGTATTATATATGGTTGTGGGTCAAACATCCCTCGCCTGGATTTTAAGGGGTTTTTCACTGCGATTCTAGAGACTGATGATGAGGTTACCAGCGTCGCTTCAATCAGGATTCATGGGAAAAAACTAGCAGAGATGCCATTTGCTGCAACCGCTTTTAATCACAGGGAGAAAGGAATGTTCACCCGGCTTCTGCAGCGAATTGAATCGGCACTCAGCTTCCTAGATATTGAGTTATTGCTCTTACCAGCTGTGCATCAAGGAAGACAAATTTGGGTTCGTTCTTTTGGGTTTGAGCCACTTGATACGAACACCAAGAACATGATAATGGGCATGGATCTGAAGGTATTTAGTGGCACAGAAATGTTGCAGAAAAGGATACCAAAGCTTACATAA 1815 0.4314 MKTEPVKETLNLTNGRKRSAAVMESEVGENVLCKTESSLNLELTLGGYRMEQTPQRVNRNAIEQKQLGNREVKVEENVNPSNDKVLALEFIARLQRRSRSFRRLRKIHGVDVKNEPEDICPRRLVKDEVVEDWENEEKVAVNENNGVFVEERRVNALEMLREEHERNKRIVENLNTGKRTVLSWMIDVKTLKSRERVYYMDHKSKQASLGGAVVRDGILCDCCSEVVSISEFEFHSWRQDFSPGLKRSDPLRNICLARGRGLCLLQCMAEAWEKEEESTGNFYNLIPVNGQEKNDDTCILCWEMGDLTCCDGCPSTFHQDCLGIQPNFEYMHFQRVVGTVRTAVANFVGCFVEVLKVLSTFGYRPYAVYARKDVYHISCLQANGGNVALAQDASFCGNGCKEIYEKLGHLLRVKHYMEGGFSWSFLYRSEVDSKALMIDSRLAECNAKLGVALSVLNQSFMPFNEEEIGVDIMRSIIYGCGSNIPRLDFKGFFTAILETDDEVTSVASIRIHGKKLAEMPFAATAFNHREKGMFTRLLQRIESALSFLDIELLLLPAVHQGRQIWVRSFGFEPLDTNTKNMIMGMDLKVFSGTEMLQKRIPKLT 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03188 604 PANTHER PHD FINGER PROTEIN 12 374 601 IPR042163 GO:0003714|GO:0045892
Spst1g03188 604 SUPERFAMILY FYVE/PHD zinc finger 288 326 IPR011011 -
Spst1g03188 604 Coils Coil 154 174 - -
Spst1g03188 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 336 IPR013083 -
Spst1g03188 604 Pfam Tify domain binding domain 211 271 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03188 Spst-Chr1 40346603 40351864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03188 178 600 PHD Transcription Factor Family AT4G14920 38.551 1.34e-92 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03188 - - pvu:PHAVU_001G152900g 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03188 1 40346603 40351864 Spst1g03188 1 40346603 40351864 ECH
Spst1g03188 1 40346603 40351864 Spst7g01241 7 40416005 40423369 PCT