Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03187 ATGACGCCAAACATGCCTCAAACCGGAGAAAGAAGAAAAAAAAGAAACAACCTTAGCCGCTTAAACTTGAATCTATGTTTTTCATATCCCATGCAACCGTTTACACCACAATCTTCCCTTACAAGCCCCACCGCCACTTCCTCAACCGCTGATCAAAATCAAAACCCTCCATCACCACCCGCCACGTCACCATCCCCGATCAAAAACTTCAACTACGATCCTACTATCCCATTCCTGAACCTCGGACCCCAACCCGAACCTGCTGACCTGGCCTCTGCCTTCGCCTCCCAACGCTTCTTCTTCACCTGCCCCGGCCGCTCCAACTCCATCGTCGAATCCACCATCACCGACGCCTATTGCACCACCTCCTCATCCTCGCCAGAAAAACCCGTCGCTTCCGTCGACGAGAAGGCGAAAGCTGCGCTCGACGGCAGCGTTGCGGTGACGACGTACTCTCCGGACCCCTACGCAGACTTCCGGCGCTCCATGGAGGAGATGGTGGCGGCGCGTCCCGAGTTGATGGACGTGGCGGCCAATTGGAAAGCGCTGCACGAGCTTCTTCTCTGCTACCTCGCGCTCAACCCGAAGAGCACACACAAGTTCATCCTCTGCGCTTTTTCTGATCTTCTCCTCAGCCTCATCTCGCTCTCTTCCCCGCCGCCGCAGGATCTTAGTGCCGGCGACGTTGCCGTCGGCGGTGGTGGATGTTCGAATTCGTTACAGTAA 726 0.5592 MTPNMPQTGERRKKRNNLSRLNLNLCFSYPMQPFTPQSSLTSPTATSSTADQNQNPPSPPATSPSPIKNFNYDPTIPFLNLGPQPEPADLASAFASQRFFFTCPGRSNSIVESTITDAYCTTSSSSPEKPVASVDEKAKAALDGSVAVTTYSPDPYADFRRSMEEMVAARPELMDVAANWKALHELLLCYLALNPKSTHKFILCAFSDLLLSLISLSSPPPQDLSAGDVAVGGGGCSNSLQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03187 241 ProSiteProfiles OVATE domain profile. 148 212 IPR006458 -
Spst1g03187 241 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 37 213 IPR038933 GO:0045892
Spst1g03187 241 Pfam Transcriptional repressor, ovate 152 213 IPR006458 -
Spst1g03187 241 MobiDBLite consensus disorder prediction 34 69 - -
Spst1g03187 241 MobiDBLite consensus disorder prediction 34 56 - -
Spst1g03187 241 NCBIfam uncharacterized plant-specific domain TIGR01568 146 214 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03187 Spst-Chr1 40342097 40342822 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Spst1g03187 Ovate 4.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03187 - - pvu:PHAVU_001G153000g 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03187 1 40342097 40342822 Spst1g03187 1 40342097 40342822 ECH
Spst1g03187 1 40342097 40342822 Spst7g01244 7 40514055 40514732 PCT