Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03172 ATGTCTTTCGTCCTGGCAGTGCTGAATGATTGCCCCTTAAAGACTAACAACATAATTGCTGGCCTTGGCCTTGAACAATTAAAGGAAGTAAAGAACCAAACCAGAACTGATTGGCTCATGTATGAAGAAAGTGTTAAACACGTACCTGATTTTAGTCGTGTTCTATTTCTATGTCCAGATTTCAGCAAGAATCAGAAAGCCTTTGTCAGGAATTTCACTCTATCATTCATAGTGGGTGATAAAGTGACTTTAGTTCAAATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTGCATTTGGTTCTGCCCTGCTGGTGAGGCATAAGCACGAAAAGAAAAAGTATGTCCTTAAAAAGATTCGTCTTGCTCGCCAAACTGACAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATATCCAGAGTTCGAAATCCATTTATTGTCGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTAGCTTTCCTGAAGAGAAACTTTGCAAGTGGCTCGTTCAGTTGCTGATGGCTCTTGATTATTTGCATGTAAATCATATTCTTCATCGTGACGTCAAGTGTTCAAATATATTCTTGACGAAAGATAAAGATATACGTCTAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTTGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGTAGGATAGATTGCATTCATACTCCTGAGATTGGCTAA 864 0.4005 MSFVLAVLNDCPLKTNNIIAGLGLEQLKEVKNQTRTDWLMYEESVKHVPDFSRVLFLCPDFSKNQKAFVRNFTLSFIVGDKVTLVQMEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISRVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVSFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDKDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGRIDCIHTPEIG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03172 287 SUPERFAMILY Protein kinase-like (PK-like) 86 278 IPR011009 -
Spst1g03172 287 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 87 276 - -
Spst1g03172 287 ProSiteProfiles Protein kinase domain profile. 90 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03172 287 Gene3D Phosphorylase Kinase; domain 1 74 169 - -
Spst1g03172 287 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Spst1g03172 287 FunFam Serine/threonine-protein kinase Nek2 87 169 - -
Spst1g03172 287 SMART serkin_6 90 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03172 287 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Spst1g03172 287 Gene3D Transferase(Phosphotransferase) domain 1 170 280 - -
Spst1g03172 287 Pfam Protein kinase domain 90 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03172 Spst-Chr1 40203182 40205590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03172 85 278 MAP Kinase Kinase Gene Family AT4G26070 36.224 3.03e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Spst1g03172 Pkinase 2.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03172 K08857 - gmx:100805201 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03172 1 40203182 40205590 Spst1g03172 1 40203182 40205590 ECH
Spst1g03172 1 40203182 40205590 Spst7g01265 7 42001074 42007225 PCT