Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03162 ATGAACTATTTGTACCCTGTGAAAGAAGAGTACTTGGAATCGTCACCACCATCGTCCTCATCATCGCCAACGTCTCAAACAGGTGGTGATGAGTCAGCAATGGTTCCTCCTCCGAGGCCAATGGAGGGGCTTCACGAAATGGGGCCGCCCCCATTTTTGACCAAGACGTATGATGCAGTGGAGGACCCCACAACGTTCCACATAGTTTCATGGAGTAGAGGCGGTTCCAGCTTTGTGGTTTGGGATCCTCACGCTTTCTCCAGAGACCTTCTCCCTCGATACTTCAAGCACAACAATTTCTCAAGTTTTGTACGGCAACTAAACACTTACGGTTTTAGAAAAATTGATCCCGATAGGTGGGAGTTTGCAAACGAAGGATTCCTGAGAGGGCATAGGCACCTTTTGGCAAACATAAGGAGAAGAAAGCAACCTTCTCAGCCTTCTACTTCTCAACAAGGACAAGGTCACTGTGTTGAAGTTGGTCGTTTTGGACTTGATGAAGAGGTTGATCGTTTGAAGCGTGACAAGCACGTGTTGATGATGGAGCTTGTAAAGCTGAGACAGCAGCAGCAGAATACCAGGTCATACCTTGAGGAAATGGAGGAGAGGCTACGAGGGACAGAAATTAAGCAGCAACAGATGATGGCTTTCTTGGCTAAAGCTATGAAGAACCCCACCTTCATCCAGCAGCTACTCCAGCAGAAAGAGAAGAGGAAGGAGCTTGAAGAGGCCATGTCCAAGAAAAGGAGAAGGCCAATCGAGCAAGGACCAAGCGGGGTTGGAGAATCAAGCATTAGAGGGGAAGGCAGAAGCAGTGTTAAAGTGGAGCCCCTAGTGTTTGGTGAATATGGATTTGGAGTCTCAGAGTTGGAAGTGCTAGCTTTGGAGATGCAAGGTTATAGTAGGGGAAGGAGGGAACAAGAGGAAGAACCTGAGGCACTAGAATCACAAGAGAGGCTGGAGAAAGAGCTTGATGAAGGGTTCTGGGAAGAACTGTTCAGCGAGGGTTTTGAGGGTGAATTAGATATTCCAACTTCGCAAGACCAAGATGACGAAGAAGATGTCAACGTGTTAGCCAATCGCTTTGGTTACTTGGGATCAAGTCCTAAATGA 1113 0.4753 MNYLYPVKEEYLESSPPSSSSSPTSQTGGDESAMVPPPRPMEGLHEMGPPPFLTKTYDAVEDPTTFHIVSWSRGGSSFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLANIRRRKQPSQPSTSQQGQGHCVEVGRFGLDEEVDRLKRDKHVLMMELVKLRQQQQNTRSYLEEMEERLRGTEIKQQQMMAFLAKAMKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQGPSGVGESSIRGEGRSSVKVEPLVFGEYGFGVSELEVLALEMQGYSRGRREQEEEPEALESQERLEKELDEGFWEELFSEGFEGELDIPTSQDQDDEEDVNVLANRFGYLGSSPK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03162 370 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03162 370 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03162 370 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03162 370 SUPERFAMILY "Winged helix" DNA-binding domain 48 141 IPR036390 -
Spst1g03162 370 Coils Coil 169 203 - -
Spst1g03162 370 MobiDBLite consensus disorder prediction 13 31 - -
Spst1g03162 370 Coils Coil 231 251 - -
Spst1g03162 370 MobiDBLite consensus disorder prediction 238 255 - -
Spst1g03162 370 SMART hsfneu3 48 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03162 370 Pfam HSF-type DNA-binding 52 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03162 370 MobiDBLite consensus disorder prediction 238 268 - -
Spst1g03162 370 ProSitePatterns HSF-type DNA-binding domain signature. 91 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst1g03162 370 MobiDBLite consensus disorder prediction 1 48 - -
Spst1g03162 370 Gene3D - 45 142 IPR036388 -
Spst1g03162 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 38 274 IPR027725 -
Spst1g03162 370 FunFam Heat shock transcription factor 1 45 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03162 Spst-Chr1 40151813 40153594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03162 31 368 HSF AT3G22830 53.684 1.11e-126 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst1g03162 HSF_DNA-bind 1.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03162 K09419 - gmx:100794264 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03162 1 40151813 40153594 Spst7g01275 7 43046237 43047639 PCT