Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03161 ATGTTCCCCACGGCTATTTCCAATTCAACTTCTTTGTCCGAGGATGCCAGTGTTTCTTCTGGTACAAAAGTTCAGGACCTGGGAGTATTCAGTCACGGCCTCTCTAAGATTTCTCCTCAACAACAACCTCAAAAGATCAAGAAAAAGCGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCCACTAATAGGTTTGTTTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGGCCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAGTAAAGAGGTAAAAAAGAAAGCCTACGTTTGCCCTGAACCGTCATGCGTTCACCACAACCCTTCTAGGGCCCTGGGGGATCTCACAGGAATCAAGAAACATTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAGGCTCACTCAAAAACCTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAATCAATTAGCCGTTGCAGACACCACCAGCACAAACCCATTCCAATCCCTCTTTCTTTTCCAAAACCAACAACAGAACTTCCAAAACCACCATATTACCAGTTTGAACCAATGGGACTCCTCTAAAGAAAACCCTAACCCTAGCGGCATTGCCACTTCCCTCCGCATCAAACCAGAATCTCAAACTTTCCACAACCCTACCCTCTCTTCACTTCTCCAACAACAAGAGCAGCAACACCCCAACAAGTTCACGATAACCTCACCCTTCGGGAACCTCCACGTGTCCTCACAAGTCTCCAACTATGCCACGTCAGCATACATGTCAGCGACTGCGCTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCCATGACGGGCCCAGGCCCTGCTGCTGTTGGGCCTCAGCGCGCAATGGGTCACGTGACTCAGCTTGGCGCAGGCGAGTTCGGAACAGTGTGTGAACTCGACCCGGTGGTGGTCCCGGATAGCTACATGAGAGGGTTCCCCGTTCGGAGCCTCAAGAGTGACCATCTCACTAGGGACTTCCTCGGACTCACGGCAGAGCCTAACGGCGGAGTTGAAGGCAGCTCGGTTGACGTTAGCACGAACGTGAAGGATATGCTGACGTTCGCAGGGAGTGTAGAGTACCACCAACCTCACCGTCAGCATCACCACCACGCCCTTCTCAAACCCCAGCAAGGCTTCGGTTTCCTTGGGACAACCACTGCCCCCGATACGTGGGGGAATTGTTGA 1389 0.5047 MFPTAISNSTSLSEDASVSSGTKVQDLGVFSHGLSKISPQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAVADTTSTNPFQSLFLFQNQQQNFQNHHITSLNQWDSSKENPNPSGIATSLRIKPESQTFHNPTLSSLLQQQEQQHPNKFTITSPFGNLHVSSQVSNYATSAYMSATALLQKAATVGAAAMTGPGPAAVGPQRAMGHVTQLGAGEFGTVCELDPVVVPDSYMRGFPVRSLKSDHLTRDFLGLTAEPNGGVEGSSVDVSTNVKDMLTFAGSVEYHQPHRQHHHHALLKPQQGFGFLGTTTAPDTWGNC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03161 462 MobiDBLite consensus disorder prediction 33 59 - -
Spst1g03161 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Spst1g03161 462 MobiDBLite consensus disorder prediction 1 20 - -
Spst1g03161 462 FunFam protein indeterminate-domain 12-like 55 123 - -
Spst1g03161 462 Gene3D Classic Zinc Finger 145 210 - -
Spst1g03161 462 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Spst1g03161 462 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Spst1g03161 462 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Spst1g03161 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 417 IPR031140 -
Spst1g03161 462 SMART c2h2final6 76 98 IPR013087 -
Spst1g03161 462 SMART c2h2final6 152 172 IPR013087 -
Spst1g03161 462 SMART c2h2final6 117 147 IPR013087 -
Spst1g03161 462 MobiDBLite consensus disorder prediction 34 48 - -
Spst1g03161 462 Gene3D Classic Zinc Finger 55 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03161 Spst-Chr1 40122076 40125505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03161 15 451 IDZ Gene Family AT4G02670 50.222 3.16e-128 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g03161 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03161 K25870 - gmx:100788975 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03161 1 40122076 40125505 Spst10g00043 10 451700 455146 PCT