Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03158 ATGTCCATTGTTGACGTCTTCATGAATACAATAGTAATTCTTGCTTTCCCCAGTCATAAAGAAAAAGGCCCCAACAATACTTTCTGTCTAACTGGTTTTCTCTCAAAATCTACCATGAGTACCCAAAATCTTAAATATGATGGCGGCTCATTTCTCATTGACATAACCTCCACTGTTAATTATACCATCAACATAGCCAAAAAAAGGTGGCGTTTTGCTTATACAGCAATTTATTCTAGACGGGTCATGCTTGCCTTGGCCAGAGAAGTCATATCTAAGAGAAATACAAACACCCATCCTTACTCTAAACTCTTCCAAACCCAATCTTCAAATTGCAGCGGTACACTTGATATCATTGAGCCCCTGATTCCCCAACATGGGACCAATCATTATTCTTTGGTTCGTGATGTTGGTAAGGCCAGGCTTGCCAGTATGGTAAAGGACAAAAACTTATTAGCCTTTACAGAGTTTGGAGGCGTTGAAGGTGTTGCATATATTCTCGGAACCATTCCAGCGAAGGGAATCACTGGCAGCCATGATGATATTGCCAAACGTATTGAAGTGTTTGGCTCAAACACTTACCAGAGGCCACCACCTAAGGTTTTCCTGAGCTTTGTGGTGGAAGCTCTCAATGATACTACTATTCTGATCCTTCTTGTTTGCGCCGCTCTTTCCCTTGGTTTTGGCATAAAAGAACATGGCCCGGGGGAAGGCTGGTACGAAGGAGGGAGTATATTTTTAGCAGTGTTTCTGGTGGTGGTTGTTACTGCACTCAGCAACTTCAGACAAGAGAAACAGTTTGACAAATTGTCTAAGATAAGCAACAACATCAAAGTAGAAGTTGTGAGAAATGAAAGGCCACAACAGATATCCATCTTTGATGTTCTTGTGGGAGATGTTGCATCCCTTAAGATTGGTGACCAGATTCCAGCTGATGGATTGTTCATCAGTGGCCATTCTTTGCTAGTGGATGAATCAAGTATGACAGGTGAGAGCGACCACGTAGAAATTGAGCCTTCAAAAAGTCCCTTCTTGTTGTCTGGTGCAAAAGTGGTGGATGGCTATGCTCAGATGCTCGTGACATCTGTGGGATCCAACACAGCATGGGGTGAAATGATGAGCTCAATTACGCGAGACACCAAGGAAAGGACACCATTACAGGCTCGCCTTGACAAGTTAACCTCTTCTATTGGAAAGGTAGGCCTCACAGTCGCTTTTCTTGTCCTCATAGTCTTGTTAACTCGTTATTTCACTGGAAACACACCAGAGGTTGAAGGGAACACGAAGTTCCAGGGGAGTAAAAGTGATGTAAACGACATTTTCAATGCGGTTGTGAGGATTGTTGCCGCCGCAGTGACTATTGTGGTGGTGGCAATCCCAGAGGGTCTGCCATTGGCTGTCACTCTCACTCTTGCTTACTCCATGAAAAGAATGATGGCTGACCAAGCAATGGTGAGGAAACTTTCTGCTTGCGAAACCATGGGATCAGCTACAGTTATTTGCACAGATAAAACTGGTACCTTAACATTGAATCAAATGAGAGTCACCAAGTTTTGGCTTGGCGTACAAAATGTTATGGAGAACTTTTCCAATGCAATGGCCCCTAAAGTTCTTGAGTTATTCCACGAAGGAGTTGGACTCAATACAACTGGCAGTATCTATAAACCTTCACCAACATCTGAACCTGAAATTTCTGGTAGCCCAACGGAGAAAGCTATACTCTTGTGGGCTGTGTCAGATTTACGCATGGACATGGATGAACTGAAGCGCACATATGAAGTTCTCCATGTTGAAACATTTAACTCGGAAAAGAAACGAAGTGGTGTCGCAATAAGGAAGAAGACCAACAACACAGTTCACGTGCATTGGAAAGGTGCTGCTGAGATTATACTTGCAATGTGTTCAAATTATATTGACAATAACGGCATAGAGAAGTCCCTTGATGAAGAACGGAGTAAATTTGAAAATATAATTCAAGGCATGGCTGCTAGTAGCCTTAGATGTATTGCTTTTGCTTACGTGCAGATTTCAGAAGATATTGATTATAACGATAAGGAGAAATCACATCAAATCCTTATAAAAGCTGGCTTGACCTTGCTCGGTATTGTGGGCCTCAAGGATCCCTGCCGACCCGACGTCAAGAGGGCTGTGGAAACTTGTAAACTTGCAGGAGTTACTATCAAGATGATCACAGGTGATAACATATTCACTGCACAAGCAATAGCAACAGAATGCGGAATATTAGACATTGATGGCCATGTGAATGCGGGAGAAGTGGTGGAGGGTATGGAATTCAGGAACTATTCTGAGGAAGAGAGAATGGAGAAAGTTGAGAAGATTCGCGTGATGGCAAGATCATCCCCTTTGGACAAACATTTGATGGTGCAATGCTTGAAAAAGAAAGGCCATGTTGTTGCAGTCACAGGAGATGGCACAAACGATGCACCTGCTTTAAAAGAAGCAGACATTGGACTTTCTATGGGGATCCAAGGAACCGAAGTTGCCAAGGAGAGTTCTGACATTGTTATCTTAGATGACAACTTCAGTACTGTTGCCACTGTTTTAAGGTGGGGGCGATGTGTTTACAACAACATCCAGAAATTCATCCAGTTTCAACTAACCGTGAATGTTGCAGCTCTAGTGATCAATTTTATTGCAGCAGTTTCTTCGGGAAATGTTCCCCTAACAACAGTTCAACTATTATGGGTAAATCTCATTATGGATACTCTAGGAGCATTGGCACTGGCTACAGAAAGGCCTACAAAGGAGTTAATGGAGAAAAAGCCTGTGGGTAGAACTGAGCCTCTTATTACTAGTATTATGTGGAGAAACCTTTTAGCTCAAGCTTTATATCAGATTGCTGTCCTCTTGGTTTTACAATTCAATGGAAAGTCAATCTTTAATGTAACGGAGAAGGTAAAGGATACTCTAATTTTTAATACTTTTGTTCTCTGCCAAGTATTCAACGAGTTCAACTCCAGAAGTATGGAGAAACTTAATGTATTCCAAGGCCTTCACAGAAACCCCTTGTTTATTGGAATTGTCGGGATTACTCTTGTTCTTCAAGTTGTGATGGTGGAACTCCTGAGGAAGTTTGCCGATACAGAGAGATTAACATGGGAGCAATGGGGAATTTGTGTTGGGATTGCAGCTGTGTCATGGCCAATTGCTTGGATTACTAAGCTCGTACCTGTTACAGATAAACCGTTCTTCAGCCACGTTAAGTGGGTAAAATTACTGGTCTTCAAGATTAAGCATTATTTATAA 3267 0.4218 MSIVDVFMNTIVILAFPSHKEKGPNNTFCLTGFLSKSTMSTQNLKYDGGSFLIDITSTVNYTINIAKKRWRFAYTAIYSRRVMLALAREVISKRNTNTHPYSKLFQTQSSNCSGTLDIIEPLIPQHGTNHYSLVRDVGKARLASMVKDKNLLAFTEFGGVEGVAYILGTIPAKGITGSHDDIAKRIEVFGSNTYQRPPPKVFLSFVVEALNDTTILILLVCAALSLGFGIKEHGPGEGWYEGGSIFLAVFLVVVVTALSNFRQEKQFDKLSKISNNIKVEVVRNERPQQISIFDVLVGDVASLKIGDQIPADGLFISGHSLLVDESSMTGESDHVEIEPSKSPFLLSGAKVVDGYAQMLVTSVGSNTAWGEMMSSITRDTKERTPLQARLDKLTSSIGKVGLTVAFLVLIVLLTRYFTGNTPEVEGNTKFQGSKSDVNDIFNAVVRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGVQNVMENFSNAMAPKVLELFHEGVGLNTTGSIYKPSPTSEPEISGSPTEKAILLWAVSDLRMDMDELKRTYEVLHVETFNSEKKRSGVAIRKKTNNTVHVHWKGAAEIILAMCSNYIDNNGIEKSLDEERSKFENIIQGMAASSLRCIAFAYVQISEDIDYNDKEKSHQILIKAGLTLLGIVGLKDPCRPDVKRAVETCKLAGVTIKMITGDNIFTAQAIATECGILDIDGHVNAGEVVEGMEFRNYSEEERMEKVEKIRVMARSSPLDKHLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFSTVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGNVPLTTVQLLWVNLIMDTLGALALATERPTKELMEKKPVGRTEPLITSIMWRNLLAQALYQIAVLLVLQFNGKSIFNVTEKVKDTLIFNTFVLCQVFNEFNSRSMEKLNVFQGLHRNPLFIGIVGITLVLQVVMVELLRKFADTERLTWEQWGICVGIAAVSWPIAWITKLVPVTDKPFFSHVKWVKLLVFKIKHYL 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03158 1088 Pfam haloacid dehalogenase-like hydrolase 499 822 - -
Spst1g03158 1088 PRINTS H+-transporting ATPase (proton pump) signature 808 824 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03158 1088 PRINTS H+-transporting ATPase (proton pump) signature 654 672 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03158 1088 PRINTS H+-transporting ATPase (proton pump) signature 840 865 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03158 1088 Pfam E1-E2 ATPase 277 479 - -
Spst1g03158 1088 FunFam Calcium-transporting ATPase 703 853 - -
Spst1g03158 1088 FunFam Calcium-transporting ATPase 511 708 - -
Spst1g03158 1088 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 508 705 IPR023299 GO:0000166
Spst1g03158 1088 CDD P-type_ATPase_Ca_PMCA-like 182 941 - -
Spst1g03158 1088 Gene3D - 178 377 - -
Spst1g03158 1088 FunFam Calcium-transporting ATPase 825 1067 - -
Spst1g03158 1088 Pfam Cation transporter/ATPase, N-terminus 158 225 IPR004014 -
Spst1g03158 1088 Gene3D - 498 853 IPR023214 -
Spst1g03158 1088 Gene3D - 511 708 IPR023299 GO:0000166
Spst1g03158 1088 SUPERFAMILY HAD-like 499 913 IPR036412 -
Spst1g03158 1088 Gene3D - 208 1062 - -
Spst1g03158 1088 ProSitePatterns E1-E2 ATPases phosphorylation site. 503 509 IPR018303 -
Spst1g03158 1088 PANTHER CATION TRANSPORTING ATPASE 135 1065 - -
Spst1g03158 1088 SUPERFAMILY Calcium ATPase, transmembrane domain M 157 1065 IPR023298 -
Spst1g03158 1088 PRINTS P-type cation-transporting ATPase superfamily signature 324 338 - -
Spst1g03158 1088 PRINTS P-type cation-transporting ATPase superfamily signature 501 515 - -
Spst1g03158 1088 PRINTS P-type cation-transporting ATPase superfamily signature 832 844 - -
Spst1g03158 1088 PRINTS P-type cation-transporting ATPase superfamily signature 808 827 - -
Spst1g03158 1088 PRINTS P-type cation-transporting ATPase superfamily signature 723 733 - -
Spst1g03158 1088 PRINTS P-type cation-transporting ATPase superfamily signature 701 712 - -
Spst1g03158 1088 NCBIfam HAD-IC family P-type ATPase 442 524 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03158 1088 NCBIfam HAD-IC family P-type ATPase 778 889 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03158 1088 NCBIfam HAD-IC family P-type ATPase 245 418 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst1g03158 1088 SUPERFAMILY Calcium ATPase, transduction domain A 276 375 IPR008250 -
Spst1g03158 1088 Coils Coil 578 598 - -
Spst1g03158 1088 SFLD p-type atpase 483 861 IPR044492 -
Spst1g03158 1088 NCBIfam calcium-translocating P-type ATPase, PMCA-type 151 1065 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Spst1g03158 1088 SFLD C1.7: P-type atpase like 483 861 - -
Spst1g03158 1088 FunFam Calcium-transporting ATPase 253 377 - -
Spst1g03158 1088 Pfam Cation transporting ATPase, C-terminus 893 1063 IPR006068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03158 Spst-Chr1 40083675 40088048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03158 66 1075 Primary Pumps ATPases AT3G63380 68.051 0.0 1335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03158 K01537 - gmx:100790034 1835.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03158 1 40083675 40088048 Spst1g03158 1 40083675 40088048 ECH
Spst1g03158 1 40083675 40088048 Spst7g00448 7 3585754 3586389 PCT