Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03145 ATGGCGAATAACCCTTCAGACACTCCCGCCGACGATTTCCTTGAACAAATTCTCGGCCTCCAGACCTTCGCTTCCGGCGACTCAGGCCTCTCTGCCGCCGATGTTGGCCTCGCCGGTACTGCTTCTCCGGCTCCGATGATGCTGCAGCTCAACTCTGCCGACGCCAACGCTCACCTCACCGGCGCTGCCTTCCACGCGCCTGTGTATCAGTTAGGTCTTAGCTTGGACCAAGGCAAAGGAGGGTTCATGAAGCCCGAGGAAGCCTCCGCTAGCGGAAAGCGTTTTCGCGACGACGTCGTTGACGGTAGAGCTAAGAATGTTTTTCATGGGCAGCCCATGCCTACTACTATGCCGGCTGCTCCACATCCTCCAGTAATACGTCCTAGGGTGCGGGCCAGAAGAGGACAGGCTACAGATCCTCACAGCATAGCTGAACGGTTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCATTGCAAGAACTTGTTCCTAGTGTCAATAAGACAGATAGAGCTGCCATGTTAGATGAAATTGTTGATTATGTCAAGTTCCTAAGGCTTCAAGTGAAGGTCTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCACCACTGGTAACTGACATACCATTATCATCAGTTGAGGAGGAAGGTGGTGAAGGTGCAAGAAACCGACCTGCTTGGGACAAGTGGTCAAATGATGGCACAGAAAGGCAGGTAGCTAAGCTTATGGAAGAAAACGTTGGGGCTGCCATGCAGTTTCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCACTAGCATCTGCGATTTACCAGTCACAACCACCCGACACTTCTAGTGTAGTCAAGCCTGAAACTAATCCTCCTTCATAG 879 0.5188 MANNPSDTPADDFLEQILGLQTFASGDSGLSAADVGLAGTASPAPMMLQLNSADANAHLTGAAFHAPVYQLGLSLDQGKGGFMKPEEASASGKRFRDDVVDGRAKNVFHGQPMPTTMPAAPHPPVIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSVVKPETNPPS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03145 292 Pfam Helix-loop-helix DNA-binding domain 141 185 IPR011598 GO:0046983
Spst1g03145 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Spst1g03145 292 SMART finulus 142 191 IPR011598 GO:0046983
Spst1g03145 292 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 87 271 - -
Spst1g03145 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 195 IPR036638 GO:0046983
Spst1g03145 292 Gene3D - 131 193 IPR036638 GO:0046983
Spst1g03145 292 FunFam Basic helix-loop-helix transcription factor 131 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03145 Spst-Chr1 39992537 39995697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03145 64 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 81.702 1.01e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g03145 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03145 - - gmx:100797789 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03145 1 39992537 39995697 Spst1g03145 1 39992537 39995697 ECH