Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03144 ATGGGGAGCTATGAAACTGAGCTTAAGGCCACTGAGTTGAGGTTGGGTTTGCCCGGTAGTGATGAACCTCAGGAGAAACGTTCATGCAGTGGCTCTGTTGTTAGAAGCAGCAACAAGAGATCTTCACCAGAATCCAGTGTGGAAGAGTCCAGGTGCAAAACCAACGTTAACTCTGATGTTTCTGATATCACAACCACAAGTGATCATGACCAAGACACTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTACAACAGAAGAAGGTGGAGCAGGTTGATGGAAATGGAATGTACGTGAAAGTCAGCATGGCCGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAGAGCTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATATTCGGAAAGGGAAGGATACAACGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAGAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGCTTATGA 612 0.4559 MGSYETELKATELRLGLPGSDEPQEKRSCSGSVVRSSNKRSSPESSVEESRCKTNVNSDVSDITTTSDHDQDTVQPAKVQVVGWPPIRSFRKNSLQQKKVEQVDGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLMALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGLGCL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03144 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 198 IPR003311 GO:0005634|GO:0006355
Spst1g03144 203 Pfam AUX/IAA family 11 201 IPR033389 -
Spst1g03144 203 Gene3D - 101 203 - -
Spst1g03144 203 MobiDBLite consensus disorder prediction 25 41 - -
Spst1g03144 203 SUPERFAMILY CAD & PB1 domains 103 191 - -
Spst1g03144 203 MobiDBLite consensus disorder prediction 1 75 - -
Spst1g03144 203 MobiDBLite consensus disorder prediction 48 74 - -
Spst1g03144 203 FunFam Auxin-responsive protein 102 203 - -
Spst1g03144 203 ProSiteProfiles PB1 domain profile. 107 199 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03144 Spst-Chr1 39986404 39987358 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03144 110 200 B3 DNA Binding Superfamily AT2G46530 37.363 8.06e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst1g03144 AUX_IAA 1.7e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03144 K14484 - gmx:100792134 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03144 1 39986404 39987358 Spst1g03144 1 39986404 39987358 ECH
Spst1g03144 1 39986404 39987358 Spst7g01328 7 48506828 48509707 PCT