Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03141 ATGGAGGTTGGCCTGAAGAAGAAGAACATGGGGTTTGAGGAAACTGAGCTAAGGCTTGGACTGCCTGGAAACGGTGCCTCAGGCACTGAAGAGGTGCTGCGGAAGAGAGGATTCTCCGAGACTCAAACTCAGGATGACACTGCCTCAGTGGATTTGATGCTTAATCTTTCATCTAAGGAACCAACCACTGGAGCAGATCCAACTGATAAGCACAACACCTTGCCTAAGGAAAAAACCCTTCTGCCAGCAGATCCTGCTAAGCCTCCAGCCAAGGCACAGGTGGTGGGTTGGCCACCTGTGCGGTCCTTCCGGAAGAACATGTTGGCTGTGCAGAAGAGCGTTGGAGAAGAGGGCGAGAAGAATAGCAGCCCTAATGCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTATCTCCGCAAAGTGGACTTGAAGATGTATAAGAGTTACCGCGAGCTCTCTGATTCTTTAGGCAAAATGTTCAGCTCCTTCACCATTGGGAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAGCTGATGGATCTTTTGAACAGTTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTTCCATGGGAGATGTTTGTTGAATCATGCAAGCGTCTACGCATCATGAAAGGAAAGGAGGCTATTGGTCTTGGTCTTGCACCAAGAGCCATGGCGAAAAGCAAGAACAGGAGCTAG 741 0.4858 MEVGLKKKNMGFEETELRLGLPGNGASGTEEVLRKRGFSETQTQDDTASVDLMLNLSSKEPTTGADPTDKHNTLPKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEEGEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKSKNRS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03141 246 SUPERFAMILY CAD & PB1 domains 120 225 - -
Spst1g03141 246 ProSiteProfiles PB1 domain profile. 126 226 IPR000270 GO:0005515
Spst1g03141 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 231 IPR003311 GO:0005634|GO:0006355
Spst1g03141 246 FunFam Auxin-responsive protein 121 237 - -
Spst1g03141 246 Gene3D - 120 237 - -
Spst1g03141 246 MobiDBLite consensus disorder prediction 42 63 - -
Spst1g03141 246 MobiDBLite consensus disorder prediction 1 94 - -
Spst1g03141 246 Pfam AUX/IAA family 14 233 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03141 Spst-Chr1 39962972 39965485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03141 119 229 B3 DNA Binding Superfamily AT3G61830 33.333 3.50e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst1g03141 AUX_IAA 1.8e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03141 K14484 - gmx:100810013 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03141 1 39962972 39965485 Spst1g03141 1 39962972 39965485 ECH