Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03133 ATGTCGAATCAGGTGCCGAAGGTGCGGAGGGACACGATTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGTCTGCACACGTGTGAGCCCTCCTCTCTTTCAATCCGTGTCAATTTTTTCTCCGATTTCTCTGCATTCGCTTCTTCCTTCACTCTACGCCCTGATGCGGGAGCATCTGGACTTTGCGTAACCGGAAAGAGATATGGGAAGTGCATTTATGATAAAATTACGGATGAAGAATTGGAAACTTGTCCAATATGCAATATTGATTTGGGTGGTGCTCCACTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTTCCCTTAAAGGGAAGAAAGGTGAAGGCACCTGAAATTGTGCCCTCAGTACCATTTCCAGCTAGAAGAAAGGAGAGATCTCTTTCGTCTTTGGTGGTCAGCACTCCAAGGGTATCTGCACAGGCAACAATGACAGGAAGAAGAACAAAACCTTCAAGAAAGGCTAATAGTCTGCGGTCCACTAGTTTTTCCATTGAAAAGCCCATTAAAAAGGAGGAAGACTTACTGGAAGATCATCCTGAGAGTTCAAGCTCACCTGACACTTCAAATAAGTTTGCTCAGAATTCCGGACAGAGTATGTCCCCTTGTGAGGGTAGTCAATCCGCACCCAATAAAGGATCAGAGAATGGTGCCGAACTATGGGATGCAAAATTGGATCTTTGGAAACCGTTGAATTGTTTAGTAGAGGTCGCAAGTAGGAGTAAATCTTTCAAGTCTAATGTGCAAGTGTCTGATGCTAAATTAGAAAGCACTCAAGTAAATGAGAGCGACTTTCAAGTGCAGAAAGCTAAAAATAAGGAAAATAAACGTAAGGCAAAAGTTGAGGATGAAAAGATTAGCCCTTATCCATTCTCTTCAGATACAGCAAAACCTAATAAATTGCGCAGAATGCGCAAGAAGAAGGAGCCTGCTTCTGGAGAATCAAGCATATCACCCCAAGCTGTACTGGATTCTGCCACTAGTAGTAGACTCTCAAGGACTGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGAAGGAGATGGACCACCCTTGCCTCAAATTCCTGCAAGTTATGTGAGAATAAAGGATGGTAGCGTACCAGTCTCATTCATCCAAAAATACCTAATGAAGAAACTGGACTTGACTAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAATCAGTGCTCCCTACATTGCGGCTTTATAATTTGGTTGAGTTGTGGCTGGATACAGCATCCACTTCACACAGAATTCCAGCGACTATTGGGTCTTCAGCAAAGGATTTTGTCATGGTCTTGGCTTATGCTCGGAAGATTCCACACCCTTGA 1410 0.4383 MSNQVPKVRRDTIVACMTCPLCNKLFREATTISECLHTCEPSSLSIRVNFFSDFSAFASSFTLRPDAGASGLCVTGKRYGKCIYDKITDEELETCPICNIDLGGAPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEIVPSVPFPARRKERSLSSLVVSTPRVSAQATMTGRRTKPSRKANSLRSTSFSIEKPIKKEEDLLEDHPESSSSPDTSNKFAQNSGQSMSPCEGSQSAPNKGSENGAELWDAKLDLWKPLNCLVEVASRSKSFKSNVQVSDAKLESTQVNESDFQVQKAKNKENKRKAKVEDEKISPYPFSSDTAKPNKLRRMRKKKEPASGESSISPQAVLDSATSSRLSRTGPIWFSLVASENQEGDGPPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQSVLPTLRLYNLVELWLDTASTSHRIPATIGSSAKDFVMVLAYARKIPHP 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03133 469 MobiDBLite consensus disorder prediction 268 289 - -
Spst1g03133 469 MobiDBLite consensus disorder prediction 188 204 - -
Spst1g03133 469 MobiDBLite consensus disorder prediction 290 310 - -
Spst1g03133 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 135 IPR013083 -
Spst1g03133 469 MobiDBLite consensus disorder prediction 151 187 - -
Spst1g03133 469 MobiDBLite consensus disorder prediction 148 240 - -
Spst1g03133 469 MobiDBLite consensus disorder prediction 205 237 - -
Spst1g03133 469 MobiDBLite consensus disorder prediction 268 349 - -
Spst1g03133 469 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 465 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03133 Spst-Chr1 39897183 39902576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03133 3 388 C3H Transcription Factor Family AT2G30580 48.196 1.72e-102 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03133 K16277 - gmx:100793731 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03133 1 39897183 39902576 Spst1g03133 1 39897183 39902576 ECH
Spst1g03133 1 39897183 39902576 Spst7g01345 7 51038763 51044212 PCT