Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03131 ATGCCTACCCACGCGCTTCCAATCCCCAAACACTCTCCGCCGCCCAAGCCCAAAGAGGCCCATTTTAGGGGCGTCCGCAAGCGTCCGTGGGGCCGCTTCGCCGCCGAAATCCGTGATCCCTGGAAAAAGACCCGAAAGTGGCTCGGTACCTTCGACACCGCCGAGGAAGCCGCCAGGGCCTACGACACTGCCGCCAGAACGCTCCGTGGGCCCAAGGCCAAAACCAACTTCACCTACGTTGCTGCTCCCGCTATGCACCTCGCCACTCCTGAATCCCAGGTCCAGGCCCAAGCCCAAGCCCAAGCCCGTGACCCACTCGCCAGAGCGGTCGAGTTCTGGGCCCCGCCTTTGTTCTTCACCACCGATGCAGCTTCCGGCGCGCCTTTGAGGTCGGAGTACAAGGGTTACAAGTTGGAGAATATTGCGGGTTTTGTGGTTACGAAGGAGGAGAACAAGAAGCCGTTGTTGTTCGACCTTAATCTGCCGGCGCCGCTCTTCTGA 501 0.6088 MPTHALPIPKHSPPPKPKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFTYVAAPAMHLATPESQVQAQAQAQARDPLARAVEFWAPPLFFTTDAASGAPLRSEYKGYKLENIAGFVVTKEENKKPLLFDLNLPAPLF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03131 166 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Spst1g03131 166 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Spst1g03131 166 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
Spst1g03131 166 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Spst1g03131 166 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 95 - -
Spst1g03131 166 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Spst1g03131 166 CDD AP2 20 80 IPR001471 GO:0003700|GO:0006355
Spst1g03131 166 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g03131 166 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Spst1g03131 166 FunFam Ethylene-responsive transcription factor 2 20 79 - -
Spst1g03131 166 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03131 Spst-Chr1 39884724 39885224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03131 18 165 AP2-EREBP Transcription Factor Family AT5G44210 46.471 2.11e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g03131 AP2 2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03131 K09286 - gmx:100816599 255.758