Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g03131 | ATGCCTACCCACGCGCTTCCAATCCCCAAACACTCTCCGCCGCCCAAGCCCAAAGAGGCCCATTTTAGGGGCGTCCGCAAGCGTCCGTGGGGCCGCTTCGCCGCCGAAATCCGTGATCCCTGGAAAAAGACCCGAAAGTGGCTCGGTACCTTCGACACCGCCGAGGAAGCCGCCAGGGCCTACGACACTGCCGCCAGAACGCTCCGTGGGCCCAAGGCCAAAACCAACTTCACCTACGTTGCTGCTCCCGCTATGCACCTCGCCACTCCTGAATCCCAGGTCCAGGCCCAAGCCCAAGCCCAAGCCCGTGACCCACTCGCCAGAGCGGTCGAGTTCTGGGCCCCGCCTTTGTTCTTCACCACCGATGCAGCTTCCGGCGCGCCTTTGAGGTCGGAGTACAAGGGTTACAAGTTGGAGAATATTGCGGGTTTTGTGGTTACGAAGGAGGAGAACAAGAAGCCGTTGTTGTTCGACCTTAATCTGCCGGCGCCGCTCTTCTGA | 501 | 0.6088 | MPTHALPIPKHSPPPKPKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFTYVAAPAMHLATPESQVQAQAQAQARDPLARAVEFWAPPLFFTTDAASGAPLRSEYKGYKLENIAGFVVTKEENKKPLLFDLNLPAPLF | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g03131 | 166 | PRINTS | Ethylene responsive element binding protein signature | 44 | 60 | IPR001471 | GO:0003700|GO:0006355 | |
Spst1g03131 | 166 | PRINTS | Ethylene responsive element binding protein signature | 22 | 33 | IPR001471 | GO:0003700|GO:0006355 | |
Spst1g03131 | 166 | Gene3D | AP2/ERF domain | 20 | 79 | IPR036955 | GO:0003700|GO:0006355 | |
Spst1g03131 | 166 | Pfam | AP2 domain | 21 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Spst1g03131 | 166 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 16 | 95 | - | - | |
Spst1g03131 | 166 | SMART | rav1_2 | 21 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Spst1g03131 | 166 | CDD | AP2 | 20 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Spst1g03131 | 166 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Spst1g03131 | 166 | SUPERFAMILY | DNA-binding domain | 21 | 79 | IPR016177 | GO:0003677 | |
Spst1g03131 | 166 | FunFam | Ethylene-responsive transcription factor 2 | 20 | 79 | - | - | |
Spst1g03131 | 166 | ProSiteProfiles | AP2/ERF domain profile. | 21 | 78 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g03131 | Spst-Chr1 | 39884724 | 39885224 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g03131 | 18 | 165 | AP2-EREBP Transcription Factor Family | AT5G44210 | 46.471 | 2.11e-32 | 113 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Spst1g03131 | AP2 | 2e-13 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g03131 | K09286 | - | gmx:100816599 | 255.758 |