Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03122 ATGGAAGGAAACTATCTGACCAGAAACACGCATAAAGGGGATAGGTTTGGCTTTGAGGAGCATTCATGGGGAAGTTCATGGCCTGCTAGAAACTATGCCTGTAGCTTTTGCAAGAGAGAGTTCAAATCTGCTCAAGCCTTGGGTGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCTTCCTTACCCACATCATCATGGGTTTCTGAGTGTCCTAAACCTAACCCTAGCATTAAGCCTAACCCAACTCAACTTTCACCTTCCTCTCCATCATCCTGTCTATCTAACAATAACCTTTTGAATTGTGCTCATAGTTCTCCACTTTATAACCCTTCTCTGACTTTGTCCTTTTCACTTACCCCGCCGGTTTCTCTCAATAGCGATAAGAAACCAAAACTCGCATCTTCCCAGCTTCTTCCTCTTTCGGTTCCTCAGGTCAATGAGGAAATTAACAAAGGGATTGGTTCGGGAGTTGAAGAAGTACAGGGTTATGCAATAGGGGAGGAATGCAAGGTTTGCAAGAGTAGTGAGCATAACATCAAGCTGGAGTTGGGAATAGGGTTTATTAAACAACCAGAGAAGTTAGATTTGGAGCTACGATTGGGGCACTAA 621 0.4396 MEGNYLTRNTHKGDRFGFEEHSWGSSWPARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPTSSWVSECPKPNPSIKPNPTQLSPSSPSSCLSNNNLLNCAHSSPLYNPSLTLSFSLTPPVSLNSDKKPKLASSQLLPLSVPQVNEEINKGIGSGVEEVQGYAIGEECKVCKSSEHNIKLELGIGFIKQPEKLDLELRLGH 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03122 206 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Spst1g03122 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Spst1g03122 206 SMART c2h2final6 32 54 IPR013087 -
Spst1g03122 206 PANTHER OS07G0101800 PROTEIN 18 206 - -
Spst1g03122 206 MobiDBLite consensus disorder prediction 60 93 - -
Spst1g03122 206 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Spst1g03122 206 Pfam C2H2-type zinc finger 32 56 - -
Spst1g03122 206 Gene3D Classic Zinc Finger 21 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03122 Spst-Chr1 39777390 39778010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03122 19 205 C2H2 Transcription Factor Family AT3G23130 38.265 6.56e-24 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g03122 zf-C2H2_6 6.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03122 - - gmx:102660083 280.796