Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03121 ATGGACTTAAACCACCCAGAAGAGTGCTACTCCAAGAGCTCCAGCGAGGAAACCAGTGACCATGATCTGGTGGGAACTGGGAGATCTTACGAGTGCATCTTTTGCAAGAGAGGCTTCACCACAGCACAAGCCTTAGGTGGACACATGAACATACACAGAAAAGAAAGGGCCAACAAGACCAAACCCAGTTTCCCTCCTCCTCCTTCCACTTCTACCAAAGTTGACGGCATCAACAACTATGCAGATCTCGTCTCCCATTCCCAAACTCCAAGCCACTGCACTCCTCCTGATGCTAATAGCTTCGGTGATGTTCGTTTTCCTGCCGCTGCACGAAGTGTTAGACCCTCCCATGGTGAGGTTTTGTGTGCAGAAGAAAACCAACTGGGACTCGTGTTTGAGCAGGATTGGAGGTTGAGAAATTTCAACTTGTACACTAATCCACCGTGCTTTCATGAAATCAAGGATAAATTTGAAGACATTGAAGAGAATGGTCTGGATTTGGAGCTGAGGTTGGGTCATCATCCATAG 528 0.4754 MDLNHPEECYSKSSSEETSDHDLVGTGRSYECIFCKRGFTTAQALGGHMNIHRKERANKTKPSFPPPPSTSTKVDGINNYADLVSHSQTPSHCTPPDANSFGDVRFPAAARSVRPSHGEVLCAEENQLGLVFEQDWRLRNFNLYTNPPCFHEIKDKFEDIEENGLDLELRLGHHP 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03121 175 Pfam C2H2-type zinc finger 30 55 - -
Spst1g03121 175 SUPERFAMILY beta-beta-alpha zinc fingers 28 57 IPR036236 -
Spst1g03121 175 Gene3D Classic Zinc Finger 5 74 - -
Spst1g03121 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Spst1g03121 175 MobiDBLite consensus disorder prediction 55 74 - -
Spst1g03121 175 PANTHER OS07G0101800 PROTEIN 14 174 - -
Spst1g03121 175 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g03121 175 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03121 Spst-Chr1 39766090 39766617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03121 30 91 C2H2 Transcription Factor Family AT5G43540 50.000 1.74e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03121 - - gmx:102664910 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03121 1 39766090 39766617 Spst1g03121 1 39766090 39766617 ECH