Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03116 ATGGCTTCTGCAAGTGCAAATGGTGGCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGGCGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTTGCAGCCATACATAAAGTGTTTGGTGCCAGCAACGTTTCCAAGTTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCCGTTGTCACAATTGCTTATGAGGCTCAGGCTCGTATTAGAGACCCCGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAAGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGATGGAGTCCAGGAACATGGAGAATAATCATCAGTGGCCAGGGAATCACAGTGTTGCAGGACAAACAATGAACCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATCAATGACGGAATGAGCATGCAAGATATACAGAGCAGAGAGGATTTCCAAATCCATTCTAAGGAAAGATCATACAACAACAATGACTTGGGTGAGCTGCAAGAACTGGCACTCAGAATGATGAGGAACTGA 639 0.4695 MASASANGGSNGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLMESRNMENNHQWPGNHSVAGQTMNHPFCPTYMNPISPQSSLESIDHSSINDGMSMQDIQSREDFQIHSKERSYNNNDLGELQELALRMMRN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03116 212 Coils Coil 96 116 - -
Spst1g03116 212 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
Spst1g03116 212 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
Spst1g03116 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03116 Spst-Chr1 39727069 39728460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03116 3 212 AS2 family AT2G42430 55.738 1.25e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst1g03116 LOB 8.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03116 K13944 - gmx:100801508 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03116 1 39727069 39728460 Spst1g03116 1 39727069 39728460 ECH