Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03115 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAGTGTGTGAGAGGTTGTGTTTTTGCTCCTTACTTTTGCCATGAACAGGGTGCCACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTGTGAGTGACCGTTGTGAAGCTGCTGTCACAATCTCTTACGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGCTGCGTAGCTCATATTTTTGCACTCCAACAACAGGTGGTGAATTTACAAGCACAACTAGCTCTTCTCAGGGAACAAGCGGGTCAGATCTATCTCAATGCCTCGGCCATAGAAAGCCCTAATGAGAAATACTTAGGAAAATCTACCACTTTTCCCCAATATCTTCAAAGTTGGTTCCAGATGGAGAATCCCATTAACTTGGCTTCACAATTTCTTCCTAAATTCTCCACCAATACTTCAACACAGTATTATGAAAATACTGATACCCTCATGGACCCAAGCCCTATTGGAAATGATGAAAATTCCGGAACCGTAGAGGAAAGCATCTCACTTTCTAACTTCGAAGAGAGTTGTAACTCCATGTCCTGTGACATGCAAAGGCAGTGGAGCTTTTATCAACTGGATAACCTTCAGTAA 660 0.4318 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLALLREQAGQIYLNASAIESPNEKYLGKSTTFPQYLQSWFQMENPINLASQFLPKFSTNTSTQYYENTDTLMDPSPIGNDENSGTVEESISLSNFEESCNSMSCDMQRQWSFYQLDNLQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03115 219 Coils Coil 87 107 - -
Spst1g03115 219 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Spst1g03115 219 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Spst1g03115 219 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03115 Spst-Chr1 39712500 39713270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03115 7 209 AS2 family AT3G58190 55.072 9.12e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst1g03115 LOB 4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03115 K13945 K13944 gmx:100816960 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03115 1 39712500 39713270 Spst1g03115 1 39712500 39713270 ECH