Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03112 ATGGTATTTGCTTGCAGGATCTTGACATGGGAGGATGCATACTATAACAATTCTGATGATTATGACTCTTCAGAAAATAAGCACTGCCAAAAGATATTGGAACAGATTGGTTGTGGGAAATTTTCACACAGCGCATTAGGCTTAGCAGTGGCTAAGATGTCATATCATGCATATTCATTGGGAGAAGGTATTGTTGGACAGGTAGCTGTTACGGGAAAACATAGGTGGATCTGTGCAGATAATCAAGTTGCAGGTTCTGGCTTGTCTTTTGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGCTGGAATCAGGACTATTGCTGTTGTTTCCATAGCCCCACTTGGTGTTGTTCAGCTTGGCTCGCTTAATAAAGTGATTGAAGATATGGGGTTTGTAACTCATGTCAGAAATCTTTTTTTGTCTACTCAAAATTACTCAATAGGCCAATGTCCTAGTCCAATACAGGGTAGTTTGAAGAGTTCTTTATCTCAGCTGGATATATTGAAGGAAAATTTGTCTTCAGATGTTATGCCTAGTGGCTTTTACGATACACAGAAATCTATGAAGAGTGAAACAGCGGATGTTTTAATGCCTCTTCAATGTTCTGGGAGGAACTATGCACCTCATTCAGCTTGTGGGAATATGTCTGATAATGTGGCCAAGCAAGAGGGGCCTGAATTGTACAGTGATGAAAGTTCCAATTTGCTACAGTCAATATCCAATATGATGAATGTGGAGCATCATAAATTTGAAGAGATGAAACCTCTCTATGGGAGGAAGTGTGAAGAAGGAAGTAGTGGCTGCAAAGATTTGAGGTTGGAATCAGAAAACAATATGTCGGCATTTTTAAGTGACTTTGTTACAGATAATAATTTAATATGTCCATCAGAAAAAGTCATTGTTGATTCTGCATGCTTTCCTTCAGCTTTTCTTGATACAGTTGTTTGTGAAAGTGATAAGTTGCATTTAGTGGATATTAACCAAAAAGGGGTGTTAAATTTCACCCAACCTTCCGATGCAAACTCACAACAACATGCTGAAAAGTCAAAGTTTCATACTGAGCCTTCTTACAAGGATATGTCACATGTGTTGAATTTCCCTGCTGGCTGTGAGCTACATGAAGCGCTTGGACCATCTTTTCTGAAAGGGAGTAAATGCTTTGATTGGCCAGCACAGGTTAATCAAGATATGAAAACTGTTGAAATGTCAGATGAGATTAGCACTAGCCAACTGACTTCTGAATCTCGTCCAGAACATCTTTTGGAAGCAATGGTGGCCAACATTTGCCATAGTAATAACAATGATGTTAATAGTGAATTATCATTTTGTACATCAATGCAATCTGCATTGGCCTCTGGAAAAAATCATGAAGCTTCTATTCACAATGCGCATGCTATTAATTCAGAAGGCTATTCAATAGATCAGCTCTCTCTTGTCAAAGAGGACAAACACCATTCTTTGAGTTCATCATCAGGGATATGTGGTGTGATGTCCTCAAAAGGTGTTTCATCTGCATTCCCTAGTTCAAGTAGTGGACAACTTGAAAGGTCGTCTGAACCATCTAAGAACAGCAAAAAGAGGGCCAGGCCCGGGGAAAGTTGTAGGCCTCGGCCAAGGGACAGGCAATTAATCCAAGATCGAATTAAGGAATTGAGGGAGCTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCACTACTGGAGCGTGCAATAAAGCACATGCTCTTTCTCCAAAGCATAACTAAACATGCTGACAAGCTAACTGACTTTGGTGATACAAAGTCAAAGCTGCATCACATGGAAGCAGACATTATTGGATCCTCTAGTTATGAGCAGGGCTCAAGCTGGGCAATGGAGGTAGGGGGTCACCTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAATGGACAGATGCTTGTTGAGATGCTCTGTGAGGAGTGCAGCCATTTTCTTGAAATAGCAGAATCCATAAGAAGTTTGGGTCTTACCATTTTGAAGGGTGGAACTAAAGTTCATGGTGAAAAGATATGGATATGCTTTGTTGTCGAGGGTCAAAACAACAGACATGTACACAGATTGGATATCTTGTGGCCGCTTGTTCAAATACTGCAATCCAAGAGCACGGTGTATTCACAATAA 2148 0.4041 MVFACRILTWEDAYYNNSDDYDSSENKHCQKILEQIGCGKFSHSALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQVAGSGLSFEFADGWQSQFSAGIRTIAVVSIAPLGVVQLGSLNKVIEDMGFVTHVRNLFLSTQNYSIGQCPSPIQGSLKSSLSQLDILKENLSSDVMPSGFYDTQKSMKSETADVLMPLQCSGRNYAPHSACGNMSDNVAKQEGPELYSDESSNLLQSISNMMNVEHHKFEEMKPLYGRKCEEGSSGCKDLRLESENNMSAFLSDFVTDNNLICPSEKVIVDSACFPSAFLDTVVCESDKLHLVDINQKGVLNFTQPSDANSQQHAEKSKFHTEPSYKDMSHVLNFPAGCELHEALGPSFLKGSKCFDWPAQVNQDMKTVEMSDEISTSQLTSESRPEHLLEAMVANICHSNNNDVNSELSFCTSMQSALASGKNHEASIHNAHAINSEGYSIDQLSLVKEDKHHSLSSSSGICGVMSSKGVSSAFPSSSSGQLERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLTDFGDTKSKLHHMEADIIGSSSYEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAESIRSLGLTILKGGTKVHGEKIWICFVVEGQNNRHVHRLDILWPLVQILQSKSTVYSQ 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03112 715 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 6 712 IPR043561 GO:0003700|GO:0006355
Spst1g03112 715 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 140 IPR025610 -
Spst1g03112 715 MobiDBLite consensus disorder prediction 505 544 - -
Spst1g03112 715 MobiDBLite consensus disorder prediction 505 519 - -
Spst1g03112 715 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 542 583 IPR036638 GO:0046983
Spst1g03112 715 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 529 578 IPR011598 GO:0046983
Spst1g03112 715 MobiDBLite consensus disorder prediction 520 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03112 Spst-Chr1 39691249 39696904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03112 7 710 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 39.459 5.36e-137 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03112 - - ccaj:109796613 1196.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03112 1 39691249 39696904 Spst1g03112 1 39691249 39696904 ECH