Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03106 ATGGCTCTGAACCACAACCCCTCTTACAAGCTCATACATCACACACCACAACCTGCTTCAGATTCTGCTTCTGCTTTGCCTGTACTGGCCATCATTGTTCCCAGCATCTTTGTCTCTGCTTTCATACTCATCACCTACTTAACTCTTGTGACCAAATGCTTCTCAAACTGGTACCTACTTAACCCCTTGAGATGGATCTCCACCCTTTGTACCTCACAACATGAAGATCAAGACCCCTTCATAGCACTCTCTCCAAGGATGTGGAACCAAGGACTTGATGAATCTGACATCAGAGAAATCCCGACACTTCAATTCACAAAAGGAGAAGTTGAAAAGAATCAAAGTGTGTTTGGCTGCGTGGTTTGTTTGACTGAGTTTCAAGATCATGATATGCTAAAAGTTCTTCCCATTTGCAAACATGCCTTTCACTTGCATTGCATTGACATTTGGCTTCAAACCAATGCCAATTGCCCTCTTTGTAGATCAAGCATTCTTTCGGGAAACACACACTTTCCAATGGATCATGTCATAGCTCCAAGCTCTTCTCCTCAGGACTCTCAAATGTTCTCTTACACGGGCAGTGAAGAGGATTTCGTGGTAATTGAACTCGGGGGAGAACGTGGCGTAGCACTGCCTCAGATGCAACAAGAAAGAAGTGACTCAAGGGAAATAACAGTACAGAGTAGAAGTCACTCCATTACAAGGAATGTTTCCATCATGGGAGATGAGTGCATTGATGTTAGGAAGAAAGATGAGCAGTTTTCTATTCAGCCTATTCGAAGATCTTTCTCAATGGATTCAGCAAACGATAGGCAAGTTTACTTAGATTTTCAAACCATCATAGAACAGAATAATAGGCATCAAAATCAGGCTAGTGCCAGCGAAGATTGTAATAGCAGAGGTCCAATATCACTCTTTCCATTTCGTTAA 930 0.4237 MALNHNPSYKLIHHTPQPASDSASALPVLAIIVPSIFVSAFILITYLTLVTKCFSNWYLLNPLRWISTLCTSQHEDQDPFIALSPRMWNQGLDESDIREIPTLQFTKGEVEKNQSVFGCVVCLTEFQDHDMLKVLPICKHAFHLHCIDIWLQTNANCPLCRSSILSGNTHFPMDHVIAPSSSPQDSQMFSYTGSEEDFVVIELGGERGVALPQMQQERSDSREITVQSRSHSITRNVSIMGDECIDVRKKDEQFSIQPIRRSFSMDSANDRQVYLDFQTIIEQNNRHQNQASASEDCNSRGPISLFPFR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03106 309 FunFam E3 ubiquitin-protein ligase ATL6 81 167 - -
Spst1g03106 309 SMART ring_2 119 160 IPR001841 -
Spst1g03106 309 SUPERFAMILY RING/U-box 118 172 - -
Spst1g03106 309 PANTHER RING-H2 FINGER PROTEIN ATL16 3 309 IPR044600 GO:0016567|GO:0016740
Spst1g03106 309 CDD RING-H2_EL5-like 119 161 - -
Spst1g03106 309 MobiDBLite consensus disorder prediction 286 309 - -
Spst1g03106 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 166 IPR013083 -
Spst1g03106 309 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Spst1g03106 309 Pfam Ring finger domain 119 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03106 Spst-Chr1 39655147 39656076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03106 19 287 C3H Transcription Factor Family AT1G04360 39.610 3.62e-64 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03106 K19041 - gmx:100809883 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03106 1 39655147 39656076 Spst1g03106 1 39655147 39656076 ECH
Spst1g03106 1 39655147 39656076 Spst7g00099 7 744672 745484 PCT