Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03102 ATGGATTTTAATTCTTCTCAACTTTCATACCAAAGTCTAGAATCCCATCTCAACTCATGGGAAGAGTTATTTTTGTTCGACAACCTTCCCTTGAACAATGCAACAAATGAATCGTCCTTGGACTCCAAATCCTCATCCTCCATTGGAGAAATGGAGTTACAAGAGCACACCTCTGGTATTACACATGATGGTTCAAATCCACAACCTGTATCAATAGCCCCAACAACGAAAGAGAAGAGACCCTATAGAGGAGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATAAGAGACCCTACAAGAAATGGTGTTCGAGTATGGATTGGAACATTTGACACTGCTGAAGCAGCTGCTATAGCTTATGATCAAGCAGCTTTCTTGACAAGGGGTGTTCTTGCTACCCTTAACTTTTCAGCACAAGTGGTGGTGGAGTCCCTCCATGACATGGGTTTCAAGGCACTGAAAAATGGTGTCTCGCCCTTGCTGGAACTCAAAAGGATGCACGTGATGAGAACGAAATCTAGGGTTAGAAGGAGTGGTGGTAAAAAGGTTAAAAGGGGTTGCAGCAACGGGAAATTGGAGGCTGCTACTGAAAGTGTGTTGGTGTTGGAGGATTTGGGTCCTGAATACCTCGACCAACTTTTGAGCTTCACTTCCCCTGGTTCTTGGTGCTGA 678 0.444 MDFNSSQLSYQSLESHLNSWEELFLFDNLPLNNATNESSLDSKSSSSIGEMELQEHTSGITHDGSNPQPVSIAPTTKEKRPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEAAAIAYDQAAFLTRGVLATLNFSAQVVVESLHDMGFKALKNGVSPLLELKRMHVMRTKSRVRRSGGKKVKRGCSNGKLEAATESVLVLEDLGPEYLDQLLSFTSPGSWC 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03102 225 MobiDBLite consensus disorder prediction 57 73 - -
Spst1g03102 225 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Spst1g03102 225 PANTHER DNA-BINDING DOMAIN 46 217 IPR044808 GO:0003700|GO:0009873
Spst1g03102 225 FunFam Ethylene-responsive transcription factor 2 80 140 - -
Spst1g03102 225 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Spst1g03102 225 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Spst1g03102 225 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Spst1g03102 225 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Spst1g03102 225 CDD AP2 82 138 IPR001471 GO:0003700|GO:0006355
Spst1g03102 225 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Spst1g03102 225 Pfam AP2 domain 82 127 IPR001471 GO:0003700|GO:0006355
Spst1g03102 225 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03102 Spst-Chr1 39646732 39647409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03102 53 224 AP2-EREBP Transcription Factor Family AT3G23240 48.571 1.49e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g03102 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03102 K14516 - gmx:100818907 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03102 1 39646732 39647409 Spst1g03102 1 39646732 39647409 ECH
Spst1g03102 1 39646732 39647409 Spst7g00097 7 728330 728983 PCT
Spst7g00624 7 6152437 6153078 Spst1g03102 1 39646732 39647409 PCT