Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03101 ATGGCTTACCCTTTCTGTCAGCATTCAGATTGGGGCACGTTGATGGAGCCTTCGAATACTTTGTTTGAACCATTTTCAAGCAGAGATATTGGTTATGACCCTTTCCATGACTCTCTTTCTTTTGATATGATCGACCACTCAAGTGATCCACAGGAACCAGGTGAAGTGATTGAAGCTATGGAAGTGCTGAAAAGTAAGAAGTCTTACGTTGGGGTAAGGAAAAGACCGTGGGGAAGATTTGCAGCGGAGATCAGAGACAAAACGAGGAGAGGTAAGAGGGTTTGGCTAGGAACGTTTGATAATGCAGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATTTGTCATGAGAGGATCAAGTGCAGTGATGAATTTTCCTGTCAAAAGGGTCATTGAGTCTTTACAAGAGATAAATTATTTTGGTTGCAGACAAGGGTGCTCTCCTGCGTTGAAACTCAAAGAGATGCGACGAAAATTATCATCAGAGGCTAAGGAAAGTAAAAGGAAACGGGAATTGGAGGAACCCAGCGTTGTGGTGTTTCAGGACTTGGGAGCTCAATATCTGGAGACACTTCTTACCATATCAGATCAAAGTGCAAGTGCAAGCTCTAGCTGCTGA 618 0.4353 MAYPFCQHSDWGTLMEPSNTLFEPFSSRDIGYDPFHDSLSFDMIDHSSDPQEPGEVIEAMEVLKSKKSYVGVRKRPWGRFAAEIRDKTRRGKRVWLGTFDNAEEAALAYDQAAFVMRGSSAVMNFPVKRVIESLQEINYFGCRQGCSPALKLKEMRRKLSSEAKESKRKRELEEPSVVVFQDLGAQYLETLLTISDQSASASSSC 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03101 205 PANTHER DNA-BINDING DOMAIN 58 196 IPR044808 GO:0003700|GO:0009873
Spst1g03101 205 Coils Coil 149 169 - -
Spst1g03101 205 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Spst1g03101 205 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Spst1g03101 205 CDD AP2 67 127 IPR001471 GO:0003700|GO:0006355
Spst1g03101 205 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
Spst1g03101 205 FunFam Ethylene-responsive transcription factor 2 67 128 - -
Spst1g03101 205 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Spst1g03101 205 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Spst1g03101 205 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Spst1g03101 205 Gene3D AP2/ERF domain 67 128 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03101 Spst-Chr1 39639537 39640154 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03101 57 200 AP2-EREBP Transcription Factor Family AT3G23240 57.718 1.12e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g03101 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03101 K14516 - gmx:100800600 263.462
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03101 1 39639537 39640154 Spst10g00418 10 4398794 4399417 ECH
Spst1g03101 1 39639537 39640154 Spst1g03101 1 39639537 39640154 ECH
Spst1g03101 1 39639537 39640154 Spst7g00625 7 6164807 6165454 PCT