Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03100 ATGGAGGAAAAGAGAGGAGTTGTGAATGGAAACGCTTCAATCGCAGAGGTTAGGTACAGAGGGATTCGTAGGAGGCCATGGGGAAAGTTTGCAGCAGAGATTCGTGACCCTACAAGAAAAGGGGCTCGAATATGGCTTGGAACATTTGACACTGCTGAACAAGCTGCACGTGCTTACGATGCTGCTGCTTTTCATTTTCGGGGTCACAAGGCCATACTCAACTTCCCTAATGAGTATGGTCACACCACTCCTAATCCTAACACGTTTTCATCTTCATTGCCTCTTCGTTCTTCTTCTTTTCCTTCTTACTCCGGTGGCGAGGGTTCCTCACAACAACAACGAAATGGTGATGAAACTTTAGAATTGGAATATTTGGACGATAAGTTGTTGGAAGAACTCCTTCAGGCGCCTGATGCAACAGGAAGCAACTCAAATTAA 438 0.4543 MEEKRGVVNGNASIAEVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDAAAFHFRGHKAILNFPNEYGHTTPNPNTFSSSLPLRSSSFPSYSGGEGSSQQQRNGDETLELEYLDDKLLEELLQAPDATGSNSN 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03100 145 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Spst1g03100 145 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Spst1g03100 145 MobiDBLite consensus disorder prediction 78 118 - -
Spst1g03100 145 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Spst1g03100 145 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Spst1g03100 145 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Spst1g03100 145 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Spst1g03100 145 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Spst1g03100 145 PANTHER DNA-BINDING DOMAIN 17 135 IPR044808 GO:0003700|GO:0009873
Spst1g03100 145 MobiDBLite consensus disorder prediction 77 120 - -
Spst1g03100 145 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Spst1g03100 145 Pfam AP2 domain 18 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03100 Spst-Chr1 39616796 39617233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03100 16 136 AP2-EREBP Transcription Factor Family AT3G23230 61.157 1.07e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g03100 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03100 - - gmx:100778998 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03100 1 39616796 39617233 Spst1g03100 1 39616796 39617233 ECH
Spst1g03100 1 39616796 39617233 Spst7g00626 7 6182616 6183104 PCT