Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03099 ATGGATTTAGCTTTCGATTTTGAGTTTGATTCTCCTCCTCTTTTTCTGAACCAAAACCTTAACTCCTTCCAAAGCGCTCGAGACCCTTTTTCCTGGGACTACAATTTTGACCACATCTTCGACCAAGCCAAAGAATCATCCACGGGGTCCAACTTTTCCGGTTCTGTGGGCAGCGTTGAGTTACAAGAAGTCTCCTCCGACGGCACCACTTACGAAGAAGAAGCCAAAGCAACAGAGCCACTGGCGGAGCCGGCGCCGGTCAAGGAGGGGAGGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAGTTCGCAGCGGAGATACGGGATTCGACCCGAAACGGCGTTCGGGTGTGGATTGGAACGTTTGACACTGCGGAAGCGGCGGCTCTGGCTTACGACCAGGCTGCGTTCTCGACGAGAGGGTCTCTGGCGGTGCTGAATTTCCCGGAGGAAGTGGTGAGAGAGTCCCTCAAGGACATGCCGAGTAAGCCCTGGGAGGAAGGTTCTTCCCCTGTTTTGGCGCTCAAGAGAAAACACACTATGAGGAGAAAGTCCAGTTTGAAGAAGAAGAAAAGCAAAGTCGATGACAGAGATCAAGTACAGTTCTGCTCCTCTTCCCAGAATGTGCTCGTGTTCGAGGATTTGGGTGCTGAGTACTTAGAACAGCTCTTGAGTTTGACTTCTTAG 690 0.5203 MDLAFDFEFDSPPLFLNQNLNSFQSARDPFSWDYNFDHIFDQAKESSTGSNFSGSVGSVELQEVSSDGTTYEEEAKATEPLAEPAPVKEGRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRRKSSLKKKKSKVDDRDQVQFCSSSQNVLVFEDLGAEYLEQLLSLTS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03099 229 ProSiteProfiles AP2/ERF domain profile. 92 150 IPR001471 GO:0003700|GO:0006355
Spst1g03099 229 FunFam Ethylene-responsive transcription factor 2 91 151 - -
Spst1g03099 229 PANTHER DNA-BINDING DOMAIN 55 225 IPR044808 GO:0003700|GO:0009873
Spst1g03099 229 SMART rav1_2 92 156 IPR001471 GO:0003700|GO:0006355
Spst1g03099 229 SUPERFAMILY DNA-binding domain 92 151 IPR016177 GO:0003677
Spst1g03099 229 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Spst1g03099 229 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Spst1g03099 229 Gene3D AP2/ERF domain 92 152 IPR036955 GO:0003700|GO:0006355
Spst1g03099 229 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Spst1g03099 229 CDD AP2 93 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03099 Spst-Chr1 39604896 39605585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03099 83 225 AP2-EREBP Transcription Factor Family AT2G31230 56.098 1.58e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g03099 AP2 3.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03099 K14516 - gmx:100801682 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03099 1 39604896 39605585 Spst1g03099 1 39604896 39605585 ECH
Spst1g03099 1 39604896 39605585 Spst7g00627 7 6191633 6192424 PCT