Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03094 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCCAGAAGAAGATCAAATTCTCATCAATTACATCAACACTTATGGCCATTCTAATTGGCGTGCACTGCCCAAACTAGCTGGGCTGTTAAGGTGTGGAAAGAGTTGTAGACTCCGGTGGATAAATTATCTGAGGCCAGACATCAAACGAGGCAACTTCACCAGAGAAGAAGAGGACGCCATAATCAGTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATAGCAGCGAGATTACCTGGGAGAACAGACAACGAGATAAAAAACGTGTGGCACACCTACTTGAAAAAGAGGCTGCCACAAAGTTACCAACAAAGCCAAGACCAAAAACGACGGAAAAGACAACCAAAGTTGGATGTGGACGCTTCCAAAGCCAATTACCAAGACGCCAAACCAGAACAACAAGACCCCGTGAATAGTGTTCACACTCATGCATCAACCAAAGAAGATAACATCACAGACGACATGCCACTTTCTCCTCCCCAATGTTCTAGCGACATCTCCTCCCTCACTACTAGTGACAGCATTAATAATAATAATAACTGTGACATGTCCTTACATGTTAATCATATTGACACGCCCGAGAACAATCTTGCATTGGACGAGGATTTCTGGTCGGAAGTTTTGTCATCTGATAATTCCGGTGAGACAAGTGGATTTCCGAGCATTGATTATGATCGGTTTGAATCAATGTGTAGCGAAGAAGGGGTGCTTATAGATGGTAGTTCGTCAAGTATGTGCGATGGCATGGACTTTTGGTGCAACGTTTACGCTAGAGCTGAGGAATTCACCCATTTACTGGAATTATGA 861 0.4448 MGRAPCCEKMGLKRGPWTPEEDQILINYINTYGHSNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDAIISLHEMLGNRWSAIAARLPGRTDNEIKNVWHTYLKKRLPQSYQQSQDQKRRKRQPKLDVDASKANYQDAKPEQQDPVNSVHTHASTKEDNITDDMPLSPPQCSSDISSLTTSDSINNNNNCDMSLHVNHIDTPENNLALDEDFWSEVLSSDNSGETSGFPSIDYDRFESMCSEEGVLIDGSSSSMCDGMDFWCNVYARAEEFTHLLEL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03094 286 Gene3D - 69 141 - -
Spst1g03094 286 CDD SANT 69 112 IPR001005 -
Spst1g03094 286 MobiDBLite consensus disorder prediction 174 188 - -
Spst1g03094 286 SMART sant 13 63 IPR001005 -
Spst1g03094 286 SMART sant 66 114 IPR001005 -
Spst1g03094 286 MobiDBLite consensus disorder prediction 145 163 - -
Spst1g03094 286 CDD SANT 16 61 IPR001005 -
Spst1g03094 286 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst1g03094 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst1g03094 286 FunFam MYB-related transcription factor 13 66 - -
Spst1g03094 286 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst1g03094 286 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst1g03094 286 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Spst1g03094 286 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Spst1g03094 286 MobiDBLite consensus disorder prediction 124 143 - -
Spst1g03094 286 FunFam Transcription factor MYB15 68 141 - -
Spst1g03094 286 Gene3D - 11 67 - -
Spst1g03094 286 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst1g03094 286 MobiDBLite consensus disorder prediction 118 188 - -
Spst1g03094 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03094 Spst-Chr1 39479745 39481456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03094 1 286 MYB Transcription Factor Family AT2G31180 49.310 2.01e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g03094 Myb_DNA-binding 4.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03094 K09422 - gmx:100775603 431.795