Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03087 ATGCTGGTCGTCCAAAAGGGACCATACGGGGATGTCCAAACTGCAGTAATTGTAACAGCAAGGTGGCATCCTAAAGATGCGATAAGAGAAGCTTTGGAAGACGCTCCTATTTTCCACCCAACAGAAGAGGAATTCCAAGACACACTTAAATATATTGCAAGCATACGTTCCAAAGCAGAACCTTATGGCATTTGCCGCATTGTCCCTCCTACTTGCTGGAAACCACCATGCTTTCTTCAGAGAGAACACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCAGCATGCTCCAGAAATTATGGCTAGTGGTCGTGAAAATACAAAAACCAATAGCAACACAAACACTCCATCTAACCAGAATGTTGAAGAATGTGATTGTGAGTCTGAACCTGGTCCTAAGTTCAGTCTTAAAACATTCAAGGAATATGCAGATATATTTAAGAACCAGTACTTCAATAACGAAGATAAGAAGAAGATCATAGGTTCCAATATAAAAGTAGCTATACGTCAGCAATGGCAACCATCTGTGGAGAATATTGAGGGTGAATATAGACGGATTGTTCAAAATCCTACTGAAGAAATTGAGGTGCTTTGTGGTAACACATTGGAGGCTGGAGTTTTTAGCAGTGGATTTCCTACAGTTCCTGATCCTGTGGAGGAATACACTTACCCTGAATATTTGAAATCTGGATGGAACTTGAATAATATACTTTCACATTCAGGTTCCCTTCTTTTGTTTGAAAGCTCTGAAGTTTTACGTAACTTTGCCCCCAATATTCGTGTCGGAATGTGCTTTTCTTCGCTCAACTGGAAAGTTGAAGAGCACCACTTATACTCATTATCTTACATGCATCTGGGTGACCCGAAAGTGTGGTATAGCGTCCCAGGAAGATTTGCTGTTAACTTTGAAACAATTTGGAAAAAGTATCTACCAGATTTTCATGCAGGACAGCGTGATATGCATGATAATATGATGATGCAATTATCATGCTCCATATTAAAGGCAGAGGGTATTCCTGTATATCGTTGTGTTCAGTATCCTCGTGAATTTGTTGTTGTCTTCCCTGGGGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCCGTAAGTTTTGCTCCTCTTGAGTGGCTGCTTAATGGACAGAATGTTGTAGAGCTATATCGTGAACAGAGGAGAAAGACATTACTTTCATATGACAAGCTTTTGTTAGGAGCAGCAAATGAAGCTGTCAGGGTCCAATGGGAAACTGGGCTGTGCATGAAGAGCACATCATCAGACTGCTTGAGATACAAAGGCATCTATCGAAAAAATGAGTTCTTAACAAAAGCTTTCAACTCTCGCATCCAGAGTGAAATTTTGAAGAGGAAATTTCTTTCCAGTTCTTTAGTATCAAAAAGAATGGATGAAAATTTTTATGCCACTTGTAGAAGGGAATGTAGTATTTGCCTGTATGATTTACACTTGTCTGCTGTAGGGTGTTCATGTTCAAATGACAAGTTTGCATGTCTTGATCATGCAAAACATTTTTGTTCTTGCCCTTGGAGCAACAAAATTCTCTTATACCGTTACGAGATCAGTGATTTGAATGTTCTTTGTCAAGCTTTGGATGGGAAATTAAGTGCAGTCTATAAATGGGCTAAAGAGTATCTCCGACTAACACTGACCTCTGTTGCCTCCAAGAGATCAAAACCACATCCAGAAAATGTTAGTTGTTCAACCTTCCCTTTGCAAGACTTGCATATGAAAGAACCTATATCCCAGACATCATCAAATGAATCCTCAAAAGGGAAACGACGCAAATTGCAGGAAATATTGAATTCATTAAAGAAAAATCACAATGAAGTGGTTTCAAGTTCTTGGAAAAAAAAACAAAATGAAGTGGTTCCAAACTCATCCAAGAAGAAACAAAATGAAGTGATTTCCCAGGTTCCGCAGACTTCTGCTGGCACTCACACTAATCATGACACTCATTCAAAAATGAAGATAAATTTGCTTCAGTCAAGCTTTGCAGATGGTAAGAAAGGAATCAATTCTGTTGGCACCAAAATTGATACGAAGATGGTTGGGCATAAGTTAACAATTTCAAAGAAAGGAGATCCAAAATCATCTAAAGTTCCTTCTGTTACAAACTCACGTTACTTGTCTTTTCTTCAAGAACATGAGTTACTTGATGTTTCATCTGATAGTATGAACACATCTTCGTCATCAGATTCTGAAAGGAAGCCCGCAATGAACAAGCCCTTCCGCAGGTGTTACATACCGAAAATAATCCAAGTCCTTCCGCAGCAGAGGAAGGGCCAAAAAATTGCTTCTGAATCCTATTCCAAGATGATACAGTACACAGGAACAAGTGAATCCCACTTGAAATTGGGTGCGATTCAATGCTAA 2424 0.3923 MLVVQKGPYGDVQTAVIVTARWHPKDAIREALEDAPIFHPTEEEFQDTLKYIASIRSKAEPYGICRIVPPTCWKPPCFLQREHIWEKSEFVAQIQRIDGHQVQHAPEIMASGRENTKTNSNTNTPSNQNVEECDCESEPGPKFSLKTFKEYADIFKNQYFNNEDKKKIIGSNIKVAIRQQWQPSVENIEGEYRRIVQNPTEEIEVLCGNTLEAGVFSSGFPTVPDPVEEYTYPEYLKSGWNLNNILSHSGSLLLFESSEVLRNFAPNIRVGMCFSSLNWKVEEHHLYSLSYMHLGDPKVWYSVPGRFAVNFETIWKKYLPDFHAGQRDMHDNMMMQLSCSILKAEGIPVYRCVQYPREFVVVFPGAYHSGFDCGFNCSEAVSFAPLEWLLNGQNVVELYREQRRKTLLSYDKLLLGAANEAVRVQWETGLCMKSTSSDCLRYKGIYRKNEFLTKAFNSRIQSEILKRKFLSSSLVSKRMDENFYATCRRECSICLYDLHLSAVGCSCSNDKFACLDHAKHFCSCPWSNKILLYRYEISDLNVLCQALDGKLSAVYKWAKEYLRLTLTSVASKRSKPHPENVSCSTFPLQDLHMKEPISQTSSNESSKGKRRKLQEILNSLKKNHNEVVSSSWKKKQNEVVPNSSKKKQNEVISQVPQTSAGTHTNHDTHSKMKINLLQSSFADGKKGINSVGTKIDTKMVGHKLTISKKGDPKSSKVPSVTNSRYLSFLQEHELLDVSSDSMNTSSSSDSERKPAMNKPFRRCYIPKIIQVLPQQRKGQKIASESYSKMIQYTGTSESHLKLGAIQC 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03087 807 MobiDBLite consensus disorder prediction 737 753 - -
Spst1g03087 807 MobiDBLite consensus disorder prediction 111 135 - -
Spst1g03087 807 Pfam C5HC2 zinc finger 491 541 IPR004198 -
Spst1g03087 807 SMART cupin_9 234 400 IPR003347 -
Spst1g03087 807 SUPERFAMILY Clavaminate synthase-like 140 426 - -
Spst1g03087 807 MobiDBLite consensus disorder prediction 624 668 - -
Spst1g03087 807 MobiDBLite consensus disorder prediction 737 757 - -
Spst1g03087 807 ProSiteProfiles JmjN domain profile. 35 76 IPR003349 -
Spst1g03087 807 Pfam jmjN domain 36 69 IPR003349 -
Spst1g03087 807 SMART JmjN_1 34 75 IPR003349 -
Spst1g03087 807 ProSiteProfiles JmjC domain profile. 234 400 IPR003347 -
Spst1g03087 807 Gene3D Cupin 20 384 - -
Spst1g03087 807 MobiDBLite consensus disorder prediction 112 133 - -
Spst1g03087 807 PANTHER LYSINE-SPECIFIC DEMETHYLASE 30 764 - -
Spst1g03087 807 Coils Coil 603 623 - -
Spst1g03087 807 Pfam JmjC domain, hydroxylase 270 383 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03087 Spst-Chr1 39422270 39428431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03087 18 644 JUMONJI Transcription Factor Family AT1G08620 45.083 4.42e-174 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst1g03087 JmjC 2.3e-32 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03087 K11446 - gmx:100804864 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03087 1 39422270 39428431 Spst1g03087 1 39422270 39428431 ECH