Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03084 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTACCCCAGTGACGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTGCTGAAGGGTACCTTGGTGGAAATTGATCTCCACATATGTGAACCATGGCAGCTTCCTGAGGTGGCTAAGCTGAACGCAAACGAGTGGTACTTCTTCAGCTTCCGGGATCGCAAATACGCGACGGGGTTTCGAACAAACCGAGCAACAACATCAGGGTATTGGAAAGCAACGGGGAAGGATCGAGCGGTGGTGGATCCGACCACGCAAGAGGTTGTAGGGATGAGGAAAACGTTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACCGGGTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGATTTTCCATTCTCTTTCTTCTCGTGTGCAATTGGAGTTGGAACTGATGGACTTTAATTGGAGGAGGGAAAAGATAAATATTGTTTGA 522 0.4866 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRAVVDPTTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKIFHSLSSRVQLELELMDFNWRREKINIV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03084 173 SUPERFAMILY NAC domain 8 142 IPR036093 GO:0003677|GO:0006355
Spst1g03084 173 Gene3D NAC domain 19 158 IPR036093 GO:0003677|GO:0006355
Spst1g03084 173 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Spst1g03084 173 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 139 - -
Spst1g03084 173 ProSiteProfiles NAC domain profile. 10 153 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03084 Spst-Chr1 39407912 39412268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03084 9 139 NAC Transcription Factor Family AT2G24430 60.305 1.03e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst1g03084 NAM 3.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03084 - - gmx:100806284 306.99