Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03072 ATGGGGAGTAGGGTTAAGCAGGGGAGGAGTTTGCAGAAGATGATGAAGTGTCTGTGTGTGAGGGAACCGGAGAAAGGAGAAGATGAAGCGGTTCCTTCCTTGGAATCTCTTGCAATCAGGGAATTTTATTCTTCAACAGAGAGTGGGCGTTCTGGCCTCGATGGAGAAATTCAGATGATGGGGTCTGATTCTGGAAACATAGACGAAACTGAATTGTCTTTACGTGCGAGTGGCATCTTGGACAATGAGGAAGCTAGTGCTTTGTTAGGAAGAGATGAATATCATAAAGGGAATATAGAAGCTGCTTTACGTGTTTATGAGAAAATAAATATAGGCGCTGTGACTTCCAAGATGAAAATTTCCCTTGCCAAAAGCAGAGAACGCAGCAAAAAACATTCCCATTATTATGCTACTCCCCCAATGTCCATGTACATGGCTGGATTACTGTTGGAAGCCATTTTCCTAAAAGCGAAATGCATGCAGGTTCTAGGAAGGTTTAAAGAAGCTGCCCAAACTTGTAAAGTTATTCTCGACATAGTTGAGTCTTCATTACCTGAAGGCTTGTCTCAAAACTTCGGTGATGATGGTAAATTGCAGGAGACTTTGAGTAAGGCAGTTGAGCTACTGCCAGAATTGTGCAAACTTGCTGATTCTCCCCGTGATGTTATTTTGTCTTACCGGCGTGCGCTCCTTCATCAATGGAATCTTGATGCAAAAACCATAGCAAGGATTCAGAAAGAATTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGCAATCCCCTCGAATCTCCGTTCCCATATGGACAGCTCCTTTGTACCCAGAAATAACTTAGAAGAGGCTATACTCCTCTTGATGATTTTGCTGAGAAAAATTTCTCTAAATAAACTTGAGTGGGATCCGTCAATTTTGGACCACCTTTCATTTGCTCTATCTGTTTCAGGGGATTTGACAGCTTTAGCCAATCAGTGGGAAGAATTACTCCCTGGGACTATCAATCGTAGAGAAAGGTACCACGCCTTATCTCTTTGTTATTATGGAGTAGGTAATGACTTGGTAGCATTGAATCTTCTTAGGAAATTGTTGAGTAGAGAGGACCCAAAACATGTTCCGTCTTTGTTAATGGCTTCTAAGATTTGTTGCGAGAACCCTGATCTTGCAAAAGAGGGGGCAAGCTTAGCTCGCAAAGTGCTTGAGAGCTTGGATGGAAGATGTGATCAGTTGGAAGGTCTTTCCAGTTGCTTACTTGGTGTTTCACTTTCAACACACTCAAAATTTGCTATTTCTAATTCTGAGAGGGTTGAGAGACAATCGGTAGCACTTGACTCTCTGGAAACTGCAAGCAAACTGACCGGAATGAGTAACCCCCTTGTAATATACTATTTGAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGACGCTGCACTTCACTATGCAAAATGCTTTATAAACTTGGAAGCTGGGTCTAATGTTAAAGGGTGGTTATTGTTAGCCCTGATATTATCTGCTAAAAAGCAGTTTTTGGATGCCGAATCTATTCTCAACGAGGCTTTGAATCAGACAGGAATATGGGATCAAGGAGAGTTACTGCGAACGAAAGCTAAAATAAAAATTGCGCAGGGCCAGTTGAAGAGTGCCATTGACACATATACTCAGCTTCTTGCTATTCTCCTAGTTCAGAGAAAGACGTTTGGTTCAAGGAAGATGCTGTATAAGGACTACATAGATCATGCTAGGAACATGGAAATAGAAATATGGCATGATCTTGCTTTTGTGTACATTAGTCTGTCGCGGTGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCACTAGGTACTATGCACGAAGCGAAGGGCCTTCACAAAGAGGCTTCAAAAGCTTTTCGTGATGCTTTGAATATTGATCCCGGACATGTCCCTAGCTTGATCTCTACTGCGGTGGTTCTTAGACGGTGCAGTAATCGATCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCAGTACGGCATGACAGATATAATGCTTCTGCATGGTATAATCTTGGGATTTTTCACAAGGACGAGGGTACAGTGCTAGAAGCTGCAGAATGTTTTGAGACAGCCAACTTTCTTGAAGAATCGGCTCCAGTTGAACCTTTCAGATGA 2181 0.4223 MGSRVKQGRSLQKMMKCLCVREPEKGEDEAVPSLESLAIREFYSSTESGRSGLDGEIQMMGSDSGNIDETELSLRASGILDNEEASALLGRDEYHKGNIEAALRVYEKINIGAVTSKMKISLAKSRERSKKHSHYYATPPMSMYMAGLLLEAIFLKAKCMQVLGRFKEAAQTCKVILDIVESSLPEGLSQNFGDDGKLQETLSKAVELLPELCKLADSPRDVILSYRRALLHQWNLDAKTIARIQKEFVVFLLYSGGEAIPSNLRSHMDSSFVPRNNLEEAILLLMILLRKISLNKLEWDPSILDHLSFALSVSGDLTALANQWEELLPGTINRRERYHALSLCYYGVGNDLVALNLLRKLLSREDPKHVPSLLMASKICCENPDLAKEGASLARKVLESLDGRCDQLEGLSSCLLGVSLSTHSKFAISNSERVERQSVALDSLETASKLTGMSNPLVIYYLSLECAEQRKLDAALHYAKCFINLEAGSNVKGWLLLALILSAKKQFLDAESILNEALNQTGIWDQGELLRTKAKIKIAQGQLKSAIDTYTQLLAILLVQRKTFGSRKMLYKDYIDHARNMEIEIWHDLAFVYISLSRWHDAEVCLSKSKAIKLYSASRCHALGTMHEAKGLHKEASKAFRDALNIDPGHVPSLISTAVVLRRCSNRSNPAIRSFLMDAVRHDRYNASAWYNLGIFHKDEGTVLEAAECFETANFLEESAPVEPFR 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03072 726 Gene3D Tetratricopeptide repeat domain 82 563 IPR011990 GO:0005515
Spst1g03072 726 SUPERFAMILY TPR-like 528 713 IPR011990 GO:0005515
Spst1g03072 726 SUPERFAMILY TPR-like 441 556 IPR011990 GO:0005515
Spst1g03072 726 SMART tpr_5 150 183 IPR019734 GO:0005515
Spst1g03072 726 SMART tpr_5 491 524 IPR019734 GO:0005515
Spst1g03072 726 SMART tpr_5 687 720 IPR019734 GO:0005515
Spst1g03072 726 SMART tpr_5 527 560 IPR019734 GO:0005515
Spst1g03072 726 SMART tpr_5 583 616 IPR019734 GO:0005515
Spst1g03072 726 SMART tpr_5 617 650 IPR019734 GO:0005515
Spst1g03072 726 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Spst1g03072 726 PANTHER PROTEIN NPG1 15 726 IPR043376 -
Spst1g03072 726 Pfam Tetratricopeptide repeat 618 649 IPR019734 GO:0005515
Spst1g03072 726 Gene3D Tetratricopeptide repeat domain 568 721 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03072 Spst-Chr1 39266243 39269844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03072 9 726 Calmodulin-binding Proteins AT4G28600 55.041 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03072 K21843 - gmx:100784353 1249.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03072 1 39266243 39269844 Spst1g03072 1 39266243 39269844 ECH
Spst1g03072 1 39266243 39269844 Spst7g00658 7 6580975 6586576 PCT