Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03069 ATGGACGATTCCGCAAAATCCAGCGCTGGTAAAACTAAACTCCTCAATCCATGGATGCTCCACTTCCAGAAACTCGCTCTCGAACTCAAGTGCCCTCTCTGTTCATGCTTAGCTGACTGCATAACGGCTGGTTCTGAATGTGCTGTTTGTAACGCAAAATACGGACAAACAGGTGATGAGAGGGTTTTGGAGCCAGGCCAGGTGATTCTTAATTCAACTTCTAGCACTATAAAAGCTGGCAAGATTCCTCAGAATTTGCCTAATATGAATAAGGTTGGGGTTGGCAAGAATCACAAATCCAAGATTGCAGTGCTTGATAGAGCTGAAGAGCTTGAGTTGTCTCGTGGGAGAGGGAAGCCCAATCCAATGCAATCTTCCCAGATGGAAATGGATGTGAATCAAGTGACACAATCAGCCCCAGATAGCCCTCCTTTTTGTGATACCAAAGGTTCTGATAATGACTGCAGCGATCAAGACAGTGAGCATCCATTACTTCCTGATAGATTGGGAAATTCTTCCTTAAAGAGAGCAAGTACAGGAAATGGAAATTTCAAGGAGAAAAGGGAACAGTTAAGGTCGGAAAGTTCAGCCTCTGAAACTGAGGGTCTTGAAAGGGATCCCAAGAGACAGAAAATTCTCGACCTTAAATCTGGAAAGGACCCTGGTGCACAATTGCCCACTAATGCTCCTAATGACTTGTGTCCAGCTGGAAGTGTCTGTTCATTTTGCCAATCCTCTAAAACCTCTGAGGCTACTGGGCCCATGCTGCATTATGCTGATGGAAACTTAGTTGCAGGAGATGCAGCAATGAAGCCAAATGTTATACCTGTGCATAGGAGTTGCATTGACTGGGCACCCCAAGTCTACTTTGTCGATGAGGTAGTAAAGAATTTGAAGGAAGAATTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGTTGCTACGTCAAATCCTGTAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCAACTTGTCGTTGGGATCATGAGGATTTTCTCTTGCTCTGTCCCCTCCATTCAAATGTCAAATTTCCATGTGAGAAATCCAGATCTAAGAAACAGGCAACTCGGAAGCATCCCACTTTGTCTCATCCGCCATCTCACCACTCAAATACTCTTGAAGCTTCACAGAATGATAATAAAAAAATGGTTTTCTGTGGATCTGCTTTATCAAATGAAGAAAAGGTACTTTTGATCAATTATGCAAGCAAGATTGGTGCGACTGTGACCAAATTCTGGACCACAAATGTTACACATGTAATTGCGGCAACTGATGCAAATGGGGCATGCTCCAGGACATTGAAAGTTCTCATGGCTATTCTAAATGGACGATGGGTTCTAAAATTGGATTGGGTAAAAGCATGCATGGAAGAGAAAAATCCTGTAGAGGAAGAACCATATGAAATTAATGTTGATAACCAAGGGTGTCAAGGTGGCCCAAGGGCTGGCAGACTTAGGGTATTGGCCAATGAGCCAAAACTATTCAGTGGCTTAAAATTTTATTTTTCTGGGGATTATGTGTCAACTTATAAGGAAGATCTTGAAGAATTAATTGAAGTGGGTGGAGGTACAGTTTTGAGAAGCAAGGAAGATTTAGAAGAGCAAAGACAAGAATGCAAAGTGAATTCTTCTAAGTTGCTGGTTGTTTACAACCTTGATCCTCCACAAGGATGTAAGTTGGGGGAGGAAGTGTCAATTCTTTGGCAAAGGCTAAACGATGCAGAGGATTTAGCTGCTAATACTTTACAAGTCATGGGTCACACGTGGATTCTTGAATCAATTGCTGCATGTAAATTGCAGCTTTTTGTTAACTAA 1866 0.4228 MDDSAKSSAGKTKLLNPWMLHFQKLALELKCPLCSCLADCITAGSECAVCNAKYGQTGDERVLEPGQVILNSTSSTIKAGKIPQNLPNMNKVGVGKNHKSKIAVLDRAEELELSRGRGKPNPMQSSQMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLLPDRLGNSSLKRASTGNGNFKEKREQLRSESSASETEGLERDPKRQKILDLKSGKDPGAQLPTNAPNDLCPAGSVCSFCQSSKTSEATGPMLHYADGNLVAGDAAMKPNVIPVHRSCIDWAPQVYFVDEVVKNLKEELARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISTCRWDHEDFLLLCPLHSNVKFPCEKSRSKKQATRKHPTLSHPPSHHSNTLEASQNDNKKMVFCGSALSNEEKVLLINYASKIGATVTKFWTTNVTHVIAATDANGACSRTLKVLMAILNGRWVLKLDWVKACMEEKNPVEEEPYEINVDNQGCQGGPRAGRLRVLANEPKLFSGLKFYFSGDYVSTYKEDLEELIEVGGGTVLRSKEDLEEQRQECKVNSSKLLVVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVMGHTWILESIAACKLQLFVN 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03069 621 ProSiteProfiles BRCT domain profile. 397 486 IPR001357 -
Spst1g03069 621 MobiDBLite consensus disorder prediction 132 226 - -
Spst1g03069 621 Pfam BRCA1 C Terminus (BRCT) domain 397 473 IPR001357 -
Spst1g03069 621 Pfam BRCT domain, a BRCA1 C-terminus domain 509 617 IPR001357 -
Spst1g03069 621 SUPERFAMILY BRCT domain 509 617 IPR036420 -
Spst1g03069 621 Pfam PHD-like zinc-binding domain 278 357 - -
Spst1g03069 621 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 109 617 IPR031099 GO:0006281|GO:0006974
Spst1g03069 621 Gene3D BRCT domain 396 502 IPR036420 -
Spst1g03069 621 ProSiteProfiles Extended PHD (ePHD) domain profile. 237 357 IPR034732 -
Spst1g03069 621 CDD BRCT_Bard1_rpt1 401 479 - -
Spst1g03069 621 ProSiteProfiles BRCT domain profile. 507 611 IPR001357 -
Spst1g03069 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 359 IPR013083 -
Spst1g03069 621 FunFam Breast cancer type 1 susceptibility protein homolog 397 503 - -
Spst1g03069 621 FunFam Breast cancer associated RING 1 235 359 - -
Spst1g03069 621 SMART BRCT_7 390 476 IPR001357 -
Spst1g03069 621 SMART BRCT_7 509 614 IPR001357 -
Spst1g03069 621 MobiDBLite consensus disorder prediction 181 216 - -
Spst1g03069 621 SUPERFAMILY BRCT domain 400 487 IPR036420 -
Spst1g03069 621 MobiDBLite consensus disorder prediction 366 392 - -
Spst1g03069 621 FunFam BRCA1-associated RING domain protein 1 509 614 - -
Spst1g03069 621 Gene3D BRCT domain 509 614 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03069 Spst-Chr1 39235053 39240564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03069 430 543 Core DNA Replication Machinery Family AT4G02110 28.571 1.67e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03069 K10683 - gmx:100784883 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03069 1 39235053 39240564 Spst1g03069 1 39235053 39240564 ECH