Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03064 ATGCTAGACATGACAACTTTCCAAAAGGTTCATGCTCTAGTCTTTCCTATACTCTTCTTATATTTGCTTCCATTGAATATCACTTCATCTCCAACAACAGAAGCAGAAGCCCTTGTCAAATGGAGAAACAGTCTAACCCCTCCTCTTCCTCCTTCTTTGAACTCATGGTCCCTCACCAACCTTCCCAACCTTTGCATTTGGGATGCCGTTGTTTGTGACAGCACCAACACAACAGTCTCAGAGATAAACTTATATGGTGCCAATCTCACGGGGACTCTCTCTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTTGATGCCAACATGTTTGAGGGGTCAATACCATCAACAATTGGCAACCTCTCAAAGCTCGCTCTATTGGACTTGGGGAACAACCTTTTTGAAGGCGCACTGCCCTATGAGCTAAGCCAGCTGAGGGAGCTTCAATATCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCGTGAATCTTCCTAAGGTATGGTACATGGACCTTGGATCAAACTATTTTGTAACTCCTCCTGACTGGTCCAAATATTCATGCACACCTTCCTTGACCCGCCTTGCTTTACATCTCAATCCATCATTGACTGGTGTATTCCCAAGTTTCATATTAGAGTGCCATAACTTGACGTACCTTGACATCTCTCAGAATAGATGGAATGGCAGTATACCAGAATCCTTGTATAGCAATTTAGGCAAGCTAGAATACCTCAACCTCACCAACTGTGGGTTTGAAGGAAAACTGTCACCCAACTTGTCCATGCTTCCAAATCTCAAAGAACTTCGTATAGGTAATAACATGTTTAATGGTTCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAATTTCTTGAATTGTCTAACATTTCTGCCCATGGGAAAATTCCTTCTTCCTTAGGCCAACTCAGGGAGCTAAAGCATCTTGATCTCAGTGTAAATTATTTCAATTCTACGGTCCCTTCTGAGCTTGGCCTATGCACAAATCTATCCTTCTTGAGTTTAGCACTGAATAAATTGTCTGGTCCTTTACCTATGTCATTATCTAGTCTGTCTAGAATATCAGAATTGGGAATATCAGATAATTACTTTTCTGGTCAACTTTCTGCTTCACTCATCTCTAATTGGACTCAGTTGACCTCCTTGCAAGTCCAAAACAATAATTTTACAGGGGAGGTTCCTCCACATATTGGCCTATTGAAAAAAATTAACCTCCTCTATCTGTACAATAATCACTTCTCTGGTCCCATTCCTGTAGAGATTGGAAACCTGAAGGCAATGACCCAGTTAGACCTTTCACAAAACAACTTCTCTGGTCCCATTCCATCTACACTTTGGAATCTAACAAACATTCAAGTCATGAATCTTTTCTTCAATGAGCTCTCTGGAATCATTCCAATGGATATCGGAAACTTGACCTCACTGCAAATCTTTGATGTCAACTCCAATAACTTGTATGGGGAGTTGCCAGAGGCCATTGTTCAACTAACTGCTTTAAGCACATTTTCTGTGTTTACCAATAACTTCAATGGAAGCATTCCCAGAGAATTTGGAAAGAGTAATCCTTCTTTGGATCATGTCTACCTTTCAAACAACAGTTTCTCAGGAGAACTGCCTCCTGACTTATGCAGTGGTGGCAAGCTAACTATTTTGGCAGTCAATAATAACAGCTTCTCAGGGCCATTGCCAAAGTCCTTGAGAGATTGTTTCTCACTCGTTAGAGTTCGGCTTGATGATAACAAGTTCACTGGAAACATCACGGACGCATTTGGGGTACTCCCAAATCTTAGTTTTTTAACACTTAGTAGAAATCAGCTTGTCGGTGAGCTCTCCCCGGAGTGGGGTGAATGTACCAACTTAACCCTGATGGATATGGGAAGCAACAAACTTTCTGGAAAAATTCTGTCTGAGCTAAGTAAGTTGAGTAAGTTAAGGTCTCTAAGCCTTCAGTCTAATGATTTCACGGGTAGCATCCCACCTGAAATCGGAAATCTAGGCCTGCTTTATAGTTTCAACTTGAGCAGTAATCATTTGACGGGAGAAATCCCAAAGAGTTATGGCAGATTGGCTCAGCTAAATCTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAGGAGCTTGGTAATTGTGATCGCTTGCTGAGCCTGAACTTGAGCCATAACAGTCTATCTGGGGAGATACCAAATGAACTTGGCAATCTGTTCTCACTCCAAATCATGTTGGACATCAGCAGCAACTCTCTTTCTGGGTCTCTGCCCCAAAACCTTGGAAAGTTAGCAACATTAGAGATTCTCAATGTATCACACAACCACCTATCAGGCACAATCCCACAATCATTTTCAAACATGATCAGCCTTCAATCTATTGATTTTTCTCACAACCACTTGAGTGGTTCCATACCCACAGGTGGTATTTTCCAGTCAGCAACTGCAGAAGCCTATGCTGGGAACTCAGGTTTGTGTGGTGAGATAAAAGGATTAACTTGCCCCAAATCATTTCCCTCAGACAGATCTGGAGGAGTTAAGAAAAAGGTTCTTCTTGGTGTTATCATACCAGTTTGTGCCTTATTTATTGGGATAATTGGTATTGGAGTAATACTTTGCCGGCGGCATGCCAAAAAACACCGTGATGAAGAGTCCAAAAGCATTGAAAAAAGTGATCAGCATAATAGCATGGTGTGGGGAAGAGACGGAAAATTCACATTTTCGGATCTTGTTAAGGCCACCGACGACTTCAATGACAAGTACTGCATCGGAAAGGGAGGATTTGGAAGTGTTTTCAGAGCACAATTACTCACAGGTCAAGTAGTTGCTGTTAAAAGGCTAAACATGTTAGACTCTGGTGACATTCCAGCAGTGAACCGCCAGAGCTTTGAGAATGAGATAAGATCACTTACAGGAGTAAGACACCGCAACATAATAAAGCTTTATGGGTTCTGTTCTAGGAGGGAACAAATGTTCTTGGTTTATGAACATGTAGACAGAGGAAGTTTGTCAAAAGTGTTGTATGGAGAGGAAGGAAAATGGGAGCTAAGATGGGCCACAAGGCTGAAAATCGTGCAAGGAATAGCGCATGCAATTTCATACCTGCACACTGATTGCTCCCCACCAATTGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTCAGACTTAGAACCTCGTCTTGCAGATTTTGGCACAGCAAAGCTGCTGAGATCAAACACTTCAACATGGACCTCAGTTGCAGGATCCTATGGCTATATGGCTCCAGAACTAGCACAAACTATGAGAGTGACTGACAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGTTGGAGATAATGATGGGAAAGCATCCGGGAGAACTCTTGACTACACTATCTTCAAACAAGTATTTGCCATCAACGGAGGAACCACAGGTGCTACTGAAGGACGTGCTTGACCAAAGGCTTCCACCTCCAACAGGCCAATTAGCAGAAGCAGTAGTGTTCACAATGACCATAGCTTTGGCATGCACACGTGCAGCTCCAGAGTCCAGACCCATGATGCGTGCTGTGGCTCAAGAACTATCGGCTACTACACAGGCTTGTCTCCCGGAGCCATTTGGCATGATAACCATGACCAAGCTTACAGGGTTCCAGAAATAG 3696 0.4275 MLDMTTFQKVHALVFPILFLYLLPLNITSSPTTEAEALVKWRNSLTPPLPPSLNSWSLTNLPNLCIWDAVVCDSTNTTVSEINLYGANLTGTLSALDFASLPNLTQLNLDANMFEGSIPSTIGNLSKLALLDLGNNLFEGALPYELSQLRELQYLSLYNNNLNGTIPYQLVNLPKVWYMDLGSNYFVTPPDWSKYSCTPSLTRLALHLNPSLTGVFPSFILECHNLTYLDISQNRWNGSIPESLYSNLGKLEYLNLTNCGFEGKLSPNLSMLPNLKELRIGNNMFNGSVPTEIGLISGLQFLELSNISAHGKIPSSLGQLRELKHLDLSVNYFNSTVPSELGLCTNLSFLSLALNKLSGPLPMSLSSLSRISELGISDNYFSGQLSASLISNWTQLTSLQVQNNNFTGEVPPHIGLLKKINLLYLYNNHFSGPIPVEIGNLKAMTQLDLSQNNFSGPIPSTLWNLTNIQVMNLFFNELSGIIPMDIGNLTSLQIFDVNSNNLYGELPEAIVQLTALSTFSVFTNNFNGSIPREFGKSNPSLDHVYLSNNSFSGELPPDLCSGGKLTILAVNNNSFSGPLPKSLRDCFSLVRVRLDDNKFTGNITDAFGVLPNLSFLTLSRNQLVGELSPEWGECTNLTLMDMGSNKLSGKILSELSKLSKLRSLSLQSNDFTGSIPPEIGNLGLLYSFNLSSNHLTGEIPKSYGRLAQLNLLDLSNNNFSGSIPKELGNCDRLLSLNLSHNSLSGEIPNELGNLFSLQIMLDISSNSLSGSLPQNLGKLATLEILNVSHNHLSGTIPQSFSNMISLQSIDFSHNHLSGSIPTGGIFQSATAEAYAGNSGLCGEIKGLTCPKSFPSDRSGGVKKKVLLGVIIPVCALFIGIIGIGVILCRRHAKKHRDEESKSIEKSDQHNSMVWGRDGKFTFSDLVKATDDFNDKYCIGKGGFGSVFRAQLLTGQVVAVKRLNMLDSGDIPAVNRQSFENEIRSLTGVRHRNIIKLYGFCSRREQMFLVYEHVDRGSLSKVLYGEEGKWELRWATRLKIVQGIAHAISYLHTDCSPPIVHRDVTLNNILLDSDLEPRLADFGTAKLLRSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVVLEIMMGKHPGELLTTLSSNKYLPSTEEPQVLLKDVLDQRLPPPTGQLAEAVVFTMTIALACTRAAPESRPMMRAVAQELSATTQACLPEPFGMITMTKLTGFQK 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03064 1231 FunFam MDIS1-interacting receptor like kinase 2 31 192 - -
Spst1g03064 1231 SMART LRR_typ_2 803 828 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 149 173 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 320 344 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 441 465 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 658 682 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 101 125 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 489 513 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 539 562 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 610 634 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 706 730 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 779 802 IPR003591 -
Spst1g03064 1231 SMART LRR_typ_2 272 296 IPR003591 -
Spst1g03064 1231 SUPERFAMILY L domain-like 537 828 - -
Spst1g03064 1231 FunFam MDIS1-interacting receptor like kinase 2 196 390 - -
Spst1g03064 1231 CDD STKc_IRAK 938 1206 - -
Spst1g03064 1231 Gene3D Ribonuclease Inhibitor 31 192 IPR032675 -
Spst1g03064 1231 Gene3D Transferase(Phosphotransferase) domain 1 1013 1214 - -
Spst1g03064 1231 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 538 853 - -
Spst1g03064 1231 FunFam Leucine-rich repeat receptor protein kinase MSP1 894 1012 - -
Spst1g03064 1231 SUPERFAMILY Protein kinase-like (PK-like) 913 1206 IPR011009 -
Spst1g03064 1231 ProSitePatterns Protein kinases ATP-binding region signature. 938 960 IPR017441 GO:0005524
Spst1g03064 1231 Gene3D Ribonuclease Inhibitor 389 509 IPR032675 -
Spst1g03064 1231 Pfam Leucine Rich Repeat 782 803 IPR001611 GO:0005515
Spst1g03064 1231 ProSiteProfiles Protein kinase domain profile. 932 1219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03064 1231 SUPERFAMILY L domain-like 440 551 - -
Spst1g03064 1231 FunFam MDIS1-interacting receptor like kinase 2 1013 1212 - -
Spst1g03064 1231 Pfam Leucine rich repeat 199 259 IPR001611 GO:0005515
Spst1g03064 1231 Pfam Leucine rich repeat 102 162 IPR001611 GO:0005515
Spst1g03064 1231 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1058 1070 IPR008266 GO:0004672|GO:0006468
Spst1g03064 1231 Gene3D Ribonuclease Inhibitor 198 388 IPR032675 -
Spst1g03064 1231 Gene3D Ribonuclease Inhibitor 512 851 IPR032675 -
Spst1g03064 1231 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 436 534 - -
Spst1g03064 1231 Pfam Protein kinase domain 934 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03064 1231 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Spst1g03064 1231 Gene3D Phosphorylase Kinase; domain 1 891 1012 - -
Spst1g03064 1231 SUPERFAMILY RNI-like 81 451 - -
Spst1g03064 1231 PANTHER LEUCINE RICH REPEAT KINASE 2 486 1213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03064 Spst-Chr1 39201103 39205117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03064 28 700 Receptor kinase-like Gene Family AT4G08850 32.741 2.08e-82 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g03064 Pkinase 5.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03064 - - pvu:PHAVU_001G163700g 1964.5