Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03063 ATGGAAGCACGTCCTACTTTCTCTATTGAAAGATCAAATGCTAAGCAGCACAATAACATGGGGATCACTGAAGCATTTCCTTCATCGCTGCCGGTCCTTCCAACCCCTCTAGAAGGGACATACCCCAAACTATCTAATTCTCAGCCACCTTTTGTGGAAAAAGAGCCTAAACCAAAATCTTTTACTCATTCAAATCATTTAGCTTCCAGTGGAGCAGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACCGATCTTCATCACTCATCCTTTTCATCTCAGGAGAAGCACCCTAGAAATACTCATTTTATTTCACAGTCATTGAGTAACATGACTTCATTACCATTATCGTATTCTTCAAATAGTGAACCAATACCTTCTACAACGTCAACCCCTTATTCCAATGGAAACAGTGTTTCCTGGCATACAGATTCTCTGCCTAGCTTTCTTGATTTCCCTGCCAATACCTCAATTGATAATAGCCAAGTAGAAAGTAGTGCCTGCAATATTATGGCAACTGAAGAGTATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGTTAATCAGTGATGATGATCCTTTGACTTCTAATTGGAATGATCTTCTTTCTGACAACATTCAAGATCTTGAACCAAAGGTCTCAAATTCATCTTCACAACTTCCAATAGGACATCAATCCCAAAGCCATCAGCAACTTATTGTTTCACCTGGAGAAAATCGTGCTGGTGTTGGCCAATCTTCATCACCAAATTCAGTACCTTCCAAGCCTCGGATGCGCTGGACACCCGAGCTTCATGAGGCATTTGTGGAAGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATACCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCTGAGTCATCTGAAGGAACTGCAGAGAAAAAACTGAGTCCAATTGAAGAGATGTCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAAATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGCAAATCTGGTGTTGAAACGTTTAAGGCATCATCGTCTGTCATTGGGAGCCCATCTGGAGTGTCCTCTGATGCCCAGAACGATTCTACAGCCAAAACTGAATCAGAAACCGTCAAAGTGGACCATTGCAAGTCAGGACCTGATCAAGCTAATGGCAGTACCACAGTTGAAGAAAGTTCATCGAAAGTGTGTGAAGAGCAGGATGCTCCTGAATGTAAAGCTTCTGAGAATCCTAAGCAACATGCTAGTGAAGATAGTGGTGCTCAAGCCCCAAAGCGTGCAAGGACAGAGGAATAA 1458 0.4232 MEARPTFSIERSNAKQHNNMGITEAFPSSLPVLPTPLEGTYPKLSNSQPPFVEKEPKPKSFTHSNHLASSGAVGHMFSSSPGYSTDLHHSSFSSQEKHPRNTHFISQSLSNMTSLPLSYSSNSEPIPSTTSTPYSNGNSVSWHTDSLPSFLDFPANTSIDNSQVESSACNIMATEEYSKRNDWQEWADQLISDDDPLTSNWNDLLSDNIQDLEPKVSNSSSQLPIGHQSQSHQQLIVSPGENRAGVGQSSSPNSVPSKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGTAEKKLSPIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVETFKASSSVIGSPSGVSSDAQNDSTAKTESETVKVDHCKSGPDQANGSTTVEESSSKVCEEQDAPECKASENPKQHASEDSGAQAPKRARTEE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03063 485 MobiDBLite consensus disorder prediction 399 420 - -
Spst1g03063 485 MobiDBLite consensus disorder prediction 9 25 - -
Spst1g03063 485 NCBIfam myb-like DNA-binding domain, SHAQKYF class 258 312 IPR006447 GO:0003677
Spst1g03063 485 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Spst1g03063 485 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Spst1g03063 485 Coils Coil 346 366 - -
Spst1g03063 485 Gene3D - 257 316 - -
Spst1g03063 485 MobiDBLite consensus disorder prediction 241 260 - -
Spst1g03063 485 MobiDBLite consensus disorder prediction 215 235 - -
Spst1g03063 485 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 221 471 IPR044848 GO:0003700
Spst1g03063 485 Pfam MYB-CC type transfactor, LHEQLE motif 343 390 IPR025756 -
Spst1g03063 485 FunFam Myb family transcription factor 257 315 - -
Spst1g03063 485 MobiDBLite consensus disorder prediction 116 137 - -
Spst1g03063 485 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 315 IPR017930 -
Spst1g03063 485 MobiDBLite consensus disorder prediction 241 258 - -
Spst1g03063 485 MobiDBLite consensus disorder prediction 448 485 - -
Spst1g03063 485 MobiDBLite consensus disorder prediction 399 485 - -
Spst1g03063 485 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03063 Spst-Chr1 39194870 39199780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03063 1 460 G2-like Transcription Factor Family AT4G28610 46.482 2.48e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst1g03063 Myb_DNA-binding 9.1e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03063 - - gmx:100810560 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03063 1 39194870 39199780 Spst1g03063 1 39194870 39199780 ECH
Spst1g03063 1 39194870 39199780 Spst7g00664 7 6617108 6620668 ECH
Spst1g03063 1 39194870 39199780 Spst7g00664 7 6617108 6620668 PCT