Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03057 ATGTCACTGGGTTTGCCAGTGGCGGCGACGGTGAACTGCGCCGACAACACCGGCGCCAAGAACCTCTACATCATATCAGTGAAGGGAATCAAGGGGAGGTTGAACCGGTTGCCGTCGGCGTGCGTCGGGGACATGGTTATGGCCACCGTCAAGAAGGGAAAGCCCGATCTCCGCAAGAAGGTGTTGCCCGCGGTCATCGTTCGTCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTTTACATGTACTTTGAAGATAATGCTGGCGTTATAGTTAATCCTAAGGGTGAAATGAAAGGCTCGGCTATTACTGGACCAATTGGAAAGGAGTGTGCTGATCTTTGGCCCAGGATTGCAAGTGCTGCCAATGCTATTGTTTAA 378 0.5317 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03057 125 FunFam 60S ribosomal protein L23 1 125 - -
Spst1g03057 125 Hamap 50S ribosomal protein L14 [rplN]. 4 125 IPR000218 GO:0003735|GO:0005840|GO:0006412
Spst1g03057 125 Pfam Ribosomal protein L14p/L23e 7 125 IPR000218 GO:0003735|GO:0005840|GO:0006412
Spst1g03057 125 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 5 124 IPR000218 GO:0003735|GO:0005840|GO:0006412
Spst1g03057 125 ProSitePatterns Ribosomal protein L14 signature. 64 90 IPR019972 -
Spst1g03057 125 SMART Ribosomal_L14_2 4 125 IPR000218 GO:0003735|GO:0005840|GO:0006412
Spst1g03057 125 Gene3D Ribosomal protein L14 1 125 IPR036853 GO:0003735|GO:0005840|GO:0006412
Spst1g03057 125 SUPERFAMILY Ribosomal protein L14 3 125 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03057 Spst-Chr1 39166211 39166860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03057 1 125 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 99.200 1.81e-88 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03057 K02894 - gmx:100811636 254.218