Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03050 ATGTCATCTGGAGCTAATGCGGGCCTCACCACGGTGGCTGGTTGCAACCACTTCTTCCAAGAAGTCTTGTGTTATCGCTTCTTCTTCAATTTCACAGGAAGAATGATGAACAAAACAGACATGTGGGCCACACGGTGTGCTTCAATGTCTAAAGATGATAACTCTTCACAGGATTCTTCATCTGATCTTGAATTGGCTCTCTCCTTGACCCTCTCTCCCTATGCCACAGCTTCCTCATTCAGTAGGACTACTATTCTCACTTCTGGGACAAAGAGACCTGCCTCTGCCTCTAATTCTGATTCTGATTCGGATTCTGTTCTTCCTGCTACCCCTCCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAACTATAATAGCCATGCAAAGTCACCAGCTACGGAAGTTTTCAATTCTACAGTTGACAAAAGAGCAAGCAGTAGTTCTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAACAACACTGTTTCCAAAGAAAATGGAAATCACAGGAATTCCCTGTTTGTGAAAGTAAAAATGGATGGAATACCAATCGGAAGGAAGGTTGATTTGAATGCTCATGGTTCCTATGAAACCTTAGCTCAAACTTTGGAGGAAATGTTTGAAGAATCAACTACAGTCCTCACTAACAAAGGATCAAATGGAGAAGATGACAGTAGTATAGTTGGAGCAGATGGGCATTCAAAATGGCTGGATGGTTCTTCTGACTTTGTCCTCACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCATGGTGGACCTCTTGTTTTATCTGGTTTGATGCTTTTGTACCATTTTTCCTTGCAATTGCAATCAGGATGTTCCTTCAGTCTGTGAGGAGGCTAAGAATCATGAGGACACATGAAGCTAATGGACTTGCTCCAAGATCAAAATGCAACCTCATATAG 960 0.4313 MSSGANAGLTTVAGCNHFFQEVLCYRFFFNFTGRMMNKTDMWATRCASMSKDDNSSQDSSSDLELALSLTLSPYATASSFSRTTILTSGTKRPASASNSDSDSDSVLPATPPSQVVGWPPLGAYRMNNYNSHAKSPATEVFNSTVDKRASSSSGVRKSADGGSDSNNTVSKENGNHRNSLFVKVKMDGIPIGRKVDLNAHGSYETLAQTLEEMFEESTTVLTNKGSNGEDDSSIVGADGHSKWLDGSSDFVLTYEDKEGDWMLVGDVPWWTSCFIWFDAFVPFFLAIAIRMFLQSVRRLRIMRTHEANGLAPRSKCNLI 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03050 319 SUPERFAMILY CAD & PB1 domains 174 271 - -
Spst1g03050 319 MobiDBLite consensus disorder prediction 87 118 - -
Spst1g03050 319 Gene3D - 180 312 - -
Spst1g03050 319 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 62 308 IPR003311 GO:0005634|GO:0006355
Spst1g03050 319 MobiDBLite consensus disorder prediction 140 177 - -
Spst1g03050 319 MobiDBLite consensus disorder prediction 87 110 - -
Spst1g03050 319 Pfam AUX/IAA family 64 269 IPR033389 -
Spst1g03050 319 Pfam AUX/IAA family 290 313 IPR033389 -
Spst1g03050 319 ProSiteProfiles PB1 domain profile. 179 296 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03050 Spst-Chr1 39104569 39120625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03050 101 281 B3 DNA Binding Superfamily AT3G61830 29.121 1.84e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Spst1g03050 AUX_IAA 3e-46 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03050 K14484 - gmx:100789143 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03050 1 39104569 39120625 Spst1g03050 1 39104569 39120625 ECH
Spst1g03050 1 39104569 39120625 Spst7g00674 7 6673807 6677867 PCT