Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03048 ATGAAGAAGATCAAGAACCAAATGAAAATCCAGATTTTCATCTTCTTTTGTTACATTGGGTGTTCATCCTATGGTTTTTCTGCTGCTGCAAATGATGAAGTATCGGCTTTGCTTTCCATAAAAGCAAGTCTCATCGATCCATTGAACACTCTTCAGGATTGGAAACTGCATGACAAAGTACTGGGAAAGGATGCAGCTCATTGTAGCTGGACAGGCATCAAATGCAACTCAGCTGGAGCTGTAGAGAAGCTTGATCTCTCCCACAAGAATCTCAGCGGTACAGTATCCAATGATATACAAGGACTTAAAAGTCTTACTTCTCTCAACTTGTGTTGCAATGCTTTTTCATCATCATTGCCAAAATCCTTAGCCAATCTCAGTGCACTTAACAACCTTGATGTAAGCCAAAATTTCTTCATTGGTGACTTTCCATTAGGCCTTGGAAGAGCATGGAAACTCGTGACATTAAATGCATCCAGCAATGAGTTCTCAGGTTCTCTTCCTGAAGACCTTGGAAATGCCTCTTCCTTAGAGATGCTTGATCTCAGAGGCAGCTTCTTTGTAGGATCAGTTCCAAAATCATTCAGTAACTTGCATAAGTTGAAGTTCCTTGGTCTATCAGGGAACAATCTGACTAGTAAAATTCCTGGAGAGCTGGGACAACTTTCGTCACTGGAGTATATGATCCTTGGATATAATGAATTTGAAGGTGGCATTCCAGAAGAGTTTGGCAACCTTACCAATCTTAAGTATCTTGATTTAGCAGTGGCCAATCTAGGTGGTGAGATTCCAGGTGGATTCGGAAAGCTCAAGTTGTTGAATACAGTTTTCTTATACAACAACAATTTTGAAGACAGAATTCCAGCATCAATTGGTAATATGACTTCTTTGCAGCTGCTGGATATTTCTGATAACATGTTGTCAGGAAAAATTCCAGCTGAAATAAGTCAGCTGAAGAATTTAAAACTTCTCAACGTGATGGGCAACCATCTGTCTGGTCCTGTGCCTTCTGGCTTTGGAGATTTGCCACAACTGGAGGTACTTGAGCTGTGGAACAATTCCTTGTCAGGGCCATTGCCTGGTAACCTTGGCAAGAATTCACAGTTGCAATGGTTGGATGTGTCATCCAATTCATTCTCTGGAGAGATTCCAGAAACCCTTTGCAGCCAGGGCAATCTCACCAAGCTTATACTATTCAACAATGCCTTCTCTGGTCCAATTCCATCAAGCCTATCAACTTGTTATTCACTTGTACGTGTTCGAATTCACAACAATTTTCTTTCTGGGACAGTTCCTGTAGGTCTTGGCAAGCTTGGGAAGCTTCAAAGGTTAGAATTGGCAAACAATAGTCTTTCTGGTGAAATTCCTGATGACATTGCTTCTTCCACATCCCTTTCCTTCATTGATCTCTCTACAAACAAACTCCGTTCTTCTCTTCCCTCCACTGTCCTTTCCATTCCAAACCTGCAAGCTTTCATGGTCTCCAACAACAACTTGGAAGGTGAAATCCCAGACCAATTCCAGGACTGTCCATCACTTGCAGTTCTTGATCTTTCATCAAATCATCTATCTGGAAGCATTCCAGAAAGCATTGCTTCTTGTCAGAAGTTGGTAAATTTGAACCTCCAAAACAACCAATTGACTGGTCAAATCCCAAATTCATTAGCTAAGATGCCTTCATTGGCCATGGTTGATCTTTCCAACAATTCTCTGACAGGCCAAATACCTGAAAGCTTTGGAATTTCTCCAGCTCTTGAAGCACTCAATGTCTCATACAATAAGTTAGAAGGCCCAGTCCCAGCAAATGGAATACTAAGAACAGTAAACCCAAATGATCTCGCGGGCAATGCTGGCCTATGTGGTGGTGTACTCCCTCCATGTGACCAAAACTCTGCCTACTTTTCAAGGCAAAGAAGCTTACGCACAAAGCATATGATTACGGCATGGATCACTGGAATATCATCAATCCTAGTTATTGGGATAGCGACTGTGGTAGCAAGATCTTTGTACATGAGATGGTACACTGACGGATTTTGCTTCCGAGAAAGATTTTATAAGGGTAGCAAAGGGTGGCCCTGGAGATTGATGGCATTTCAGAGGCTTGGTTTTACAAGTACTGACATTCTAGCTTGCATCAAGGAAACAAATTTGATTGGCATGGGAGCCACAGGGGTTGTTTATAAGGCTGAGGTACCGCAATCAAATACAGTTGTGGCAGTGAAAAAGTTGTGGAGAACAGGAACTGATATTGAAGTAGGAAGCAGTGGTGACCTTGTGGGGGAGGTGAATCTTTTAGGGAGATTAAGACATAGGAACATTGTTAGACTGTTAGGATTTCTTCATAATGACATTGATCTGATGATAGTTTATGAATTCATGCACAATGGCAACCTAGGAGAAGCCTTGCACGGTAGACAAGCAACAAGACTGCTTGTAGACTGGGTTTCGCGGTACAACATAGCTCTAGGAGTTGCACAAGGACTTGCTTATCTTCATCATGATTGTCATCCACCTGTTATCCATCGAGACATCAAGTCAAACAATATATTGCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGTTTAGCCAAGATGATGATCCGGAAGAATGAAACAGTCTCCATGGTTGCTGGATCTTATGGCTACATTGCCCCTGAATATGGATATGCGTTAAAGGTAGATGAAAAGATTGATGTTTACAGTTATGGAGTAGTTTTGTTGGAGCTTCTCACAGGAAAGAGGCCTTTAGATACAGACTTTGGAGAGTCAATAGACATAGTAGAGTGGATTAGAATGAAGATTAGAGACAACAAATCTCTAGAAGAAGCATTAGACCCCAGTGTAGGAAATAGCAGGCATGTTGTAGAAGAGATGCTTTTAGTTCTAAGAATAGCAACTCTATGCACTGCCAAGCTCCCCAAGGACAGACCAACCATGAGGGACGTCATTATGATGCTTGGAGAGGCAAAGCCTCGGAGAAAGAGCAGTGGCAATGATGCAGCTAACAACAAAGAGTCACCAGTTTTTAGCACATCTCCAGTTAATGGCCTAATGTAG 3063 0.4185 MKKIKNQMKIQIFIFFCYIGCSSYGFSAAANDEVSALLSIKASLIDPLNTLQDWKLHDKVLGKDAAHCSWTGIKCNSAGAVEKLDLSHKNLSGTVSNDIQGLKSLTSLNLCCNAFSSSLPKSLANLSALNNLDVSQNFFIGDFPLGLGRAWKLVTLNASSNEFSGSLPEDLGNASSLEMLDLRGSFFVGSVPKSFSNLHKLKFLGLSGNNLTSKIPGELGQLSSLEYMILGYNEFEGGIPEEFGNLTNLKYLDLAVANLGGEIPGGFGKLKLLNTVFLYNNNFEDRIPASIGNMTSLQLLDISDNMLSGKIPAEISQLKNLKLLNVMGNHLSGPVPSGFGDLPQLEVLELWNNSLSGPLPGNLGKNSQLQWLDVSSNSFSGEIPETLCSQGNLTKLILFNNAFSGPIPSSLSTCYSLVRVRIHNNFLSGTVPVGLGKLGKLQRLELANNSLSGEIPDDIASSTSLSFIDLSTNKLRSSLPSTVLSIPNLQAFMVSNNNLEGEIPDQFQDCPSLAVLDLSSNHLSGSIPESIASCQKLVNLNLQNNQLTGQIPNSLAKMPSLAMVDLSNNSLTGQIPESFGISPALEALNVSYNKLEGPVPANGILRTVNPNDLAGNAGLCGGVLPPCDQNSAYFSRQRSLRTKHMITAWITGISSILVIGIATVVARSLYMRWYTDGFCFRERFYKGSKGWPWRLMAFQRLGFTSTDILACIKETNLIGMGATGVVYKAEVPQSNTVVAVKKLWRTGTDIEVGSSGDLVGEVNLLGRLRHRNIVRLLGFLHNDIDLMIVYEFMHNGNLGEALHGRQATRLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLDTDFGESIDIVEWIRMKIRDNKSLEEALDPSVGNSRHVVEEMLLVLRIATLCTAKLPKDRPTMRDVIMMLGEAKPRRKSSGNDAANNKESPVFSTSPVNGLM 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03048 1020 FunFam MDIS1-interacting receptor like kinase 1 797 1007 - -
Spst1g03048 1020 Gene3D Ribonuclease Inhibitor 283 386 IPR032675 -
Spst1g03048 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 30 185 - -
Spst1g03048 1020 Gene3D Ribonuclease Inhibitor 387 628 IPR032675 -
Spst1g03048 1020 SUPERFAMILY L domain-like 67 375 - -
Spst1g03048 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 186 286 - -
Spst1g03048 1020 Pfam Leucine rich repeat N-terminal domain 30 76 IPR013210 -
Spst1g03048 1020 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 370 631 - -
Spst1g03048 1020 MobiDBLite consensus disorder prediction 990 1020 - -
Spst1g03048 1020 ProSitePatterns Protein kinases ATP-binding region signature. 718 742 IPR017441 GO:0005524
Spst1g03048 1020 MobiDBLite consensus disorder prediction 1002 1020 - -
Spst1g03048 1020 SUPERFAMILY Protein kinase-like (PK-like) 708 988 IPR011009 -
Spst1g03048 1020 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
Spst1g03048 1020 Gene3D Ribonuclease Inhibitor 184 282 IPR032675 -
Spst1g03048 1020 SMART serkin_6 712 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03048 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Spst1g03048 1020 SUPERFAMILY RNI-like 287 597 - -
Spst1g03048 1020 SMART LRR_typ_2 102 125 IPR003591 -
Spst1g03048 1020 SMART LRR_typ_2 294 318 IPR003591 -
Spst1g03048 1020 SMART LRR_typ_2 198 222 IPR003591 -
Spst1g03048 1020 SMART LRR_typ_2 342 366 IPR003591 -
Spst1g03048 1020 SMART LRR_typ_2 438 462 IPR003591 -
Spst1g03048 1020 SMART LRR_typ_2 510 534 IPR003591 -
Spst1g03048 1020 SMART LRR_typ_2 558 582 IPR003591 -
Spst1g03048 1020 SMART LRR_typ_2 486 509 IPR003591 -
Spst1g03048 1020 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 242 989 - -
Spst1g03048 1020 Gene3D Phosphorylase Kinase; domain 1 712 796 - -
Spst1g03048 1020 ProSiteProfiles Protein kinase domain profile. 712 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03048 1020 Gene3D Transferase(Phosphotransferase) domain 1 797 1013 - -
Spst1g03048 1020 Pfam Leucine rich repeat 487 547 IPR001611 GO:0005515
Spst1g03048 1020 Pfam Leucine rich repeat 176 234 IPR001611 GO:0005515
Spst1g03048 1020 Pfam Leucine rich repeat 273 331 IPR001611 GO:0005515
Spst1g03048 1020 Pfam Protein kinase domain 714 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03048 1020 FunFam Leucine-rich repeat receptor protein kinase EMS1 287 369 - -
Spst1g03048 1020 FunFam MDIS1-interacting receptor like kinase 1 712 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03048 Spst-Chr1 39096857 39100125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03048 11 1020 Receptor kinase-like Gene Family AT1G08590 58.892 0.0 1163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g03048 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03048 - - gmx:100811284 1814.66