Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03041 ATGAGAGTGACTGACAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGTTGGAGATAATGATGGGAAAGCATCCGGGAGAACTCTTGACTACACTATCTTCAAACAAGTATTTGCCATCAACGGAGGAACCACAGGTGCTACTGAAGGACGTGCTTGACCAAAGGCTTCCACCTCCAACAGGCCAATTAGCAGAAGCAGTAGTGTTCACAATGACCATAGCTTTGGCATGCACACGTGCAGCTCCAGAGTCCAGACCCATGATGCGTGCTGTGGCTCAAGAACTATCGGCTACTACACAGGCTTGTCTTCCGGAGCCATTTGGCATGATAACCATGACCAAGCTTACAGGGTTCCAGAAATAG 363 0.4848 MRVTDKCDVYSFGVVVLEIMMGKHPGELLTTLSSNKYLPSTEEPQVLLKDVLDQRLPPPTGQLAEAVVFTMTIALACTRAAPESRPMMRAVAQELSATTQACLPEPFGMITMTKLTGFQK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03041 120 SUPERFAMILY Protein kinase-like (PK-like) 3 101 IPR011009 -
Spst1g03041 120 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Spst1g03041 120 Pfam Protein tyrosine and serine/threonine kinase 3 95 IPR001245 GO:0004672|GO:0006468
Spst1g03041 120 PANTHER LEUCINE RICH REPEAT KINASE 2 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03041 Spst-Chr1 39020917 39021279 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03041 2 106 Receptor kinase-like Gene Family AT5G47850 37.037 1.03e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g03041 PK_Tyr_Ser-Thr 6e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03041 - - gmx:100786462 214.542