Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03040 ATGAAAAATGTGAAATGTGAAGACACTAGACCATTCCAAATGCTAGACATGACAACTTTCCAAAAGGTTCATGCTCTAGTCTTTCCTATACTCTTCTTATATTTGCTTCCATTGAATATCACTTCATCTCCAACAACAGAAGCAGAAGCCCTTGTCAAATGGAGAAACAGTCTAACCCCTCCTCTTCCTCCTTCTTTGAACTCATGGTCCCTCACCAACCTTCCCAACCTTTGCATTTGGGATGCCGTTGTTTGTGACAGCACCAACACAACAGTCTCAGAGATAAACTTATATGGTGCCAATCTCACGGGGACTCTCTCTGCCTTGGATTTTGCTTCCCTCCCTAACCTCACCCAACTCAACCTTGATGCCAACATGTTTGAGGGGTCAATACCATCAACAATTGGCAACCTCTCAAAGCTCGCTCTATTGGACTTGGGGAACAACCTTTTTGAAGGCGCACTGCCCTATGAGCTAAGCCAGCTGAGGGAGCTTCAATATCTCAGCCTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCCTGAATCTTCCTAAGGTATGGTACATGGACCTTGGATCAAACTATTTTGTAACTCCTCCTGACTGGTCCAAATATTCATGCACACCTTCCTTGACCCGCCTTGCTTTACATCTCAATCCATCATTGACTGGTGTATTCCCAAGTTTCATATTAGAGTGCCATAACTTGACGTACCTTGACATCTCTCAGAATAGATGGAATGGCAGTATACCAGAATCCTTGTATAGCAATTTAGGCAAGCTAGAATACCTCAACCTCACCAACTGTGGGTTTGAAGGAAAACTGTCACCCAACTTGTCCATGCTTCCAAATCTCAAAGAACTTCGTATAGGTAATAACATGTTTAATGGTTCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAATTTCTTGAATTGTCTAACATTTCTGCCCATGGGAAAATTCCTTCTTCCTTAGGCCAACTCCGGGAGCTAAAGCATCTTGATCTCAGTGTAAATTATTTCAATTCTACGGTCCCTTCTGAGCTTGGCCTATGCACAAATCTATCCTTCTTGAGTTTAGCACTGAATAAATTGTCTGGTCCTTTACCTATGTCATTATCTAGTCTGTCTAGAATATCAGAATTGGGAATATCAGATAATTACTTTTCTGGTCAACTTTCTGCTTCACTCATCTCTAATTGGACTCAGTTGACCTCCTTGCAAGTCCAAAACAATAATTTTACAGGGGAGGTTCCTCCACATATTGGCCTATTGAAAAAAATTAACCTCCTCTATCTGTACAGTAATCACTTCTCTGGTCCCATTCCTGTAGAGATTGGAAACCTGAAGGCAATGACCCAGTTAGACCTTTCAAAAAACAACTTCTCTGGCCCCATTCCACCTACACTTTGGAATCTAACAAACATTCGAGTCATGAATCTTTTCTCCAATGAGCTCTCTGGAATCATTCCAATGGATATCGGAAACTTGACCTCACTGCAAATCTTTGATGTCAACACCAATAACTTGTATGGGGAGTTGCCAGAGGCCATTGTTCAACTAACTGCTTTAGGCACATTTTCTGTGTTTACCAATAACTTCAATGGAAGCATTCCCAGAGAATTTGGAAAGAGTAATCCTTCTTTGGATCATGTCTACCTTTCAAACAACAGTTTCTCAGGAGAACTGCCTCCTGACTTATGCAGTGGTGGCAAGCTAACTATTTTGGCAGTCAATAATAACAGCTTCTCAGGGCCATTGCCAAAGTCCTTGAGAGATTGTTTCTCACTCGTTAGAGTTCGGCTTGATGATAACAAGTTCACTGGAAACATCACGGACGCATTTGGGGTACTCCCAAATCTTAGTTTTATAACACTTAGTAGAAATCAGCTTGTCGGTGAGCTCTCCCCGGAGTGGGGTGAATGTACCAACTTAACCCTGATGGATATGGGAAGCAACAAACTTTCTGGAAAAATTCTGTCTGAGCTAAGTAAATTGAGTAAGTTAAGGTCTCTAAGCCTTCAGTCTAATGATTTCACGGGTAGCATCCCACCTGAAATCGGAAATCTAGGCCTGCTTTATATTTTCAACTTGAGCAGTAATCATTTAACGGGAGAAATCCCAAAGAGTTATGGCAGATTGGCTCAGCTAAATCTTCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAAGGAGCTTGGTAATTGTGATCGCTTGCTGAGCCTGAACTTGAGCCATAACAGTCTATCTGGGGAGATACCAAATGAACTTGGCAATCTGTTCTCACTCCAAATCATGTTGGACATCAGCAGCAACTCTCTTTCTGGGTCTCTGCCCCAAAACCTTGGAAAGTTAGCAACATTAGAGATTCTCAATGTATCACACAACCACCTATCAGGCACAATCCCACAATCATTTTCAAACATGATCAGCCTTCAATCTATTGATTTTTCTCACAACCACTTGAGTGGTTCCATACCCACAGGTGGTATTTTCCAGTCAGCAACTGCAGAAGCCTATGCTGGGAACTCAGGTTTGTGTGGTGAGATAAAAGGATTAACTTGCCCCAAATCATTTCCCTCAGACAGATCTGGAGGAGTTAAGAAAAAGGTTCTTCTTGGTGTTATCATACCAGTTTGTGCCTTATTTATTGGGATAATTGGTATTGGAGTAATACTTTGCCGGCGACATGCCAAAAAACACCGTGATGAAGAGTCCAAAAGCATTGAAAAAAGTGATCAGCATAATAGCATGGTGTGGGGAAGAGACGGAAAATTTACATTTTCGGATCTTGTTAAGGCCACCGACGACTTCAATGACAAGTACTGCATCGGAAAGGGAGGATTTGGAAGTGTTTTCAGAGCACAATTACTCACAGGTCAAGTAGTTGCTGTTAAAAGGCTAAATATGTTAGACTCTGGTGACATTCCAGCAGTGAACCGCCAGAGCTTTGAGAATGAGATAAGATCACTTACAGGAGTAAGACACCGCAACATAATAAAGCTTTATGGGTTCTGTTCTAGGAGGGAACAAATGTTCTTGGTTTATGAACATGTAGACAGAGGAAGTTTGTCAAAAGTGTTGTATGGAGAGGAAGGAAAATGGGAGCTAAGATGGGCCACAAGGCTGAAAATCGTGCAAGGAATAGCGCATGCAATTTCATACCTGCACACTGATTGTTCCCCACCAATTGTGCACCGGGATGTAACACTGAATAACATACTACTAGACTCAGACTTAGAACCTCGTCTTGCAGATTTTGGCACAGCAAAGCTGCTGAGCTCAAACACTTCAACATGGACCTCAGTTGCCGGATCCTATGGCTATATGGCTCCAGGTACACCTTCCAACCAATTTGAATTCTAG 3387 0.4201 MKNVKCEDTRPFQMLDMTTFQKVHALVFPILFLYLLPLNITSSPTTEAEALVKWRNSLTPPLPPSLNSWSLTNLPNLCIWDAVVCDSTNTTVSEINLYGANLTGTLSALDFASLPNLTQLNLDANMFEGSIPSTIGNLSKLALLDLGNNLFEGALPYELSQLRELQYLSLYNNNLNGTIPYQLLNLPKVWYMDLGSNYFVTPPDWSKYSCTPSLTRLALHLNPSLTGVFPSFILECHNLTYLDISQNRWNGSIPESLYSNLGKLEYLNLTNCGFEGKLSPNLSMLPNLKELRIGNNMFNGSVPTEIGLISGLQFLELSNISAHGKIPSSLGQLRELKHLDLSVNYFNSTVPSELGLCTNLSFLSLALNKLSGPLPMSLSSLSRISELGISDNYFSGQLSASLISNWTQLTSLQVQNNNFTGEVPPHIGLLKKINLLYLYSNHFSGPIPVEIGNLKAMTQLDLSKNNFSGPIPPTLWNLTNIRVMNLFSNELSGIIPMDIGNLTSLQIFDVNTNNLYGELPEAIVQLTALGTFSVFTNNFNGSIPREFGKSNPSLDHVYLSNNSFSGELPPDLCSGGKLTILAVNNNSFSGPLPKSLRDCFSLVRVRLDDNKFTGNITDAFGVLPNLSFITLSRNQLVGELSPEWGECTNLTLMDMGSNKLSGKILSELSKLSKLRSLSLQSNDFTGSIPPEIGNLGLLYIFNLSSNHLTGEIPKSYGRLAQLNLLDLSNNNFSGSIPKELGNCDRLLSLNLSHNSLSGEIPNELGNLFSLQIMLDISSNSLSGSLPQNLGKLATLEILNVSHNHLSGTIPQSFSNMISLQSIDFSHNHLSGSIPTGGIFQSATAEAYAGNSGLCGEIKGLTCPKSFPSDRSGGVKKKVLLGVIIPVCALFIGIIGIGVILCRRHAKKHRDEESKSIEKSDQHNSMVWGRDGKFTFSDLVKATDDFNDKYCIGKGGFGSVFRAQLLTGQVVAVKRLNMLDSGDIPAVNRQSFENEIRSLTGVRHRNIIKLYGFCSRREQMFLVYEHVDRGSLSKVLYGEEGKWELRWATRLKIVQGIAHAISYLHTDCSPPIVHRDVTLNNILLDSDLEPRLADFGTAKLLSSNTSTWTSVAGSYGYMAPGTPSNQFEF 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03040 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 528 1119 - -
Spst1g03040 1128 Pfam Leucine rich repeat N-terminal domain 46 86 IPR013210 -
Spst1g03040 1128 Pfam Leucine Rich Repeat 795 816 IPR001611 GO:0005515
Spst1g03040 1128 FunFam Leucine Rich Repeat family protein, expressed 206 302 - -
Spst1g03040 1128 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1071 1083 IPR008266 GO:0004672|GO:0006468
Spst1g03040 1128 ProSiteProfiles Protein kinase domain profile. 945 1128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03040 1128 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 551 866 - -
Spst1g03040 1128 Gene3D Ribonuclease Inhibitor 44 205 IPR032675 -
Spst1g03040 1128 Gene3D Ribonuclease Inhibitor 403 523 IPR032675 -
Spst1g03040 1128 Gene3D Phosphorylase Kinase; domain 1 904 1025 - -
Spst1g03040 1128 Gene3D Transferase(Phosphotransferase) domain 1 1026 1124 - -
Spst1g03040 1128 FunFam Leucine-rich repeat receptor protein kinase MSP1 907 1025 - -
Spst1g03040 1128 Gene3D Ribonuclease Inhibitor 208 402 IPR032675 -
Spst1g03040 1128 Gene3D Ribonuclease Inhibitor 524 864 IPR032675 -
Spst1g03040 1128 SUPERFAMILY L domain-like 551 841 - -
Spst1g03040 1128 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Spst1g03040 1128 Pfam Leucine rich repeat 212 272 IPR001611 GO:0005515
Spst1g03040 1128 FunFam MDIS1-interacting receptor like kinase 2 44 205 - -
Spst1g03040 1128 ProSitePatterns Protein kinases ATP-binding region signature. 951 973 IPR017441 GO:0005524
Spst1g03040 1128 SUPERFAMILY L domain-like 438 544 - -
Spst1g03040 1128 SMART LRR_typ_2 623 647 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 162 186 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 502 526 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 285 309 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 816 841 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 552 575 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 671 695 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 114 138 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 454 478 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 792 815 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 719 743 IPR003591 -
Spst1g03040 1128 SMART LRR_typ_2 333 357 IPR003591 -
Spst1g03040 1128 SUPERFAMILY Protein kinase-like (PK-like) 926 1119 IPR011009 -
Spst1g03040 1128 Pfam Protein kinase domain 947 1119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g03040 1128 FunFam Os07g0541700 protein 1026 1112 - -
Spst1g03040 1128 FunFam MDIS1-interacting receptor like kinase 2 384 550 - -
Spst1g03040 1128 SUPERFAMILY RNI-like 94 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03040 Spst-Chr1 39016881 39020612 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03040 9 713 Receptor kinase-like Gene Family AT4G08850 32.028 2.67e-82 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g03040 Pkinase 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03040 - - pvu:PHAVU_001G163700g 1768.05