Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03034 ATGAAACCTAAGAACTCAAGTTCCCAATTAAAAGCACTTGTTGTAGATGATGATAGAGTCACACGAATGACTCATGAAGCGCTGTTGAAAAAAGTAGGGGTGGAAAGTCTTGCTTCAGTGGAAAATGGCAAAAAAGCTGTGGACCTTCATTGCAATGGTCAGAGTTTTGACCTAATTCTCATGGACAAAGACATGCCTGTCATGAATGGAGTTGAGGCAACCAAACAACTTCGTTCAATGGGCATTCGTGACATGATTGTTGGTGTGTCGTCATCACGCGGTGCAGAGAATGTGCAACAATTCATGGATGCAGGACTAGATCACTTCTACACTAAACCCTTGACCGTTGATATGCTTAAAGCAATTATTGATAAGATCTAG 381 0.4147 MKPKNSSSQLKALVVDDDRVTRMTHEALLKKVGVESLASVENGKKAVDLHCNGQSFDLILMDKDMPVMNGVEATKQLRSMGIRDMIVGVSSSRGAENVQQFMDAGLDHFYTKPLTVDMLKAIIDKI 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03034 126 Gene3D - 1 126 - -
Spst1g03034 126 CDD REC_hyHK_CKI1_RcsC-like 13 123 - -
Spst1g03034 126 ProSiteProfiles Response regulatory domain profile. 11 126 IPR001789 GO:0000160
Spst1g03034 126 Pfam Response regulator receiver domain 13 123 IPR001789 GO:0000160
Spst1g03034 126 SUPERFAMILY CheY-like 9 126 IPR011006 -
Spst1g03034 126 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 125 - -
Spst1g03034 126 SMART REC_2 10 123 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03034 Spst-Chr1 38941852 38942352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03034 10 115 Response Regulator Gene Family AT3G04280 49.074 6.57e-27 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst1g03034 Response_reg 2.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03034 - - var:108322984 225.713