Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03029 ATGGCAACTCAAGGTCAAGTCATCACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCTTTGACGATTGAAGACGTCCAGGTGGCTCCACCTCAGGCCGGCGAGGTTCGAGTCCAAATCCTCTACACCGCTCTCTGTCACACCGATGCGTACACTTGGGGCGGCAAGGATCCCGAAGGTCTCTTCCCCTGCATTCTGGGCCATGAGGCTGCTGGGATTGTGGAAAGTGTTGGAGAAGGTGTAACTAATGTTAAGCCTGGGGATCATGTCATTCCCTGTTACCAGGCTGAGTGTGGGGAGTGCAAGACATGCAAATCAGGGAAGACCAACCTTTGCGGCAAGGTTCGGTCTGCCACTGGAGTTGGGGTCATGCTCAATGATGGCAAGAGTCGGTTCTCGATTAATGGAAAGCCCATTTATCATTTCATGGGAACCTCCACTTTTAGTCAATACACTGTTGTTCATGATGTCAGTGTAGCTAAGATTGATCCCATAGCTCCTTTGGATAAAGTTTGTCTCCTTGGATGTGGAGTTTCAACTGGCCTTGGAGCTGTCTGGAACACGGCAAAGGTTGAGCCAGGGACAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGGAGAGGGTGCAAAAGCTGCTGGTGCATCCCGGATTATTGGCATAGATATTGACAGCAAAAAGTTTGATATAGCGAAGAACTTTGGAGTCACTGAGTTTATAAATCCAAAGGAACATGAAAAACCAATTCAGCAGGTCATAATTGATCGTACAGATGGTGGAGTTGATTACAGCTTTGAGTGTATTGGAAATGTTTCTGTGATGAGGGCTGCTTTGGAATGCTGCCACAAGGGTTGGGGGACATCAGTTATTGTGGGTGTTGCAGCATCAGGTCAGGAAATATCAACCCGACCTTTCCAATTGGTGAGTGGACGTGTCTGGAAAGGAACTGCTTTTGGTGGCTTCAAGAGCAGGTCACAGGTGCCTTGGCTTGTAGACAAGTACCTGAAGAAGGAAATCAAGGTTGATGAATACATTACCCATACTTTGACACTCTCTGAGATCAACAAAGCTTTTGATCTCTTGCATGAGGGGGGATGTCTTCGTTGTGTGCTTTCAACACAAGAATGA 1140 0.4781 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVQILYTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGEGVTNVKPGDHVIPCYQAECGECKTCKSGKTNLCGKVRSATGVGVMLNDGKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPIAPLDKVCLLGCGVSTGLGAVWNTAKVEPGTIVAIFGLGTVGLAVGEGAKAAGASRIIGIDIDSKKFDIAKNFGVTEFINPKEHEKPIQQVIIDRTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHTLTLSEINKAFDLLHEGGCLRCVLSTQE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03029 379 Gene3D - 182 320 - -
Spst1g03029 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Spst1g03029 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Spst1g03029 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Spst1g03029 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 200 - -
Spst1g03029 379 Gene3D - 13 372 - -
Spst1g03029 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Spst1g03029 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Spst1g03029 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Spst1g03029 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Spst1g03029 379 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Spst1g03029 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Spst1g03029 379 SUPERFAMILY GroES-like 3 197 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03029 Spst-Chr1 38910731 38913304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03029 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.444 1.61e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03029 K00121 - gmx:100499743 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03029 1 38910731 38913304 Spst1g03029 1 38910731 38913304 ECH
Spst1g03029 1 38910731 38913304 Spst7g00686 7 6786358 6789977 PCT