Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03020 ATGGAATGGTTACATTACATGCTGGTTGAGTCAAAACAAGAATTTCTGCAGCAAAGTCAGGAGCAGTTGGCTGCTACTGCCAATCCTATAGTTGGGTCCCGGGTTTGGGTGGAGGATCCTGATGTGGCCTGGATAGATGGTGAGGTCTTGGAGGCTAAAGGAGAAGTAATTAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTTCCAGCATTTATCATAAAGATACCGAAGTCCCACCAAGTGGAGTGGATGATATGACAAAGCTTGCATACCTGCATGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATAAATGAAATTTATACTTACACTGGGAATATATTGATTGCTGTGAACCCTTTCATCAAGCTCCCTCATTTATATGATAGCCACATGATGGCCCAATATAAAGGAGCAGCTTTTGGCGAGCTAAGTCCACATCCCTTTGCTGTTGCAGATGCAGCATACAGGCTTATGATAAATGAGGGAATCAGTCAGTCAATATTGGTTAGTGGTGAAAGTGGAGCTGGTAAAACAGAAAGTACCAAGTTACTCATGAGGTATCTTGCTTACATGGGTGGAAGAGCTGCTGCTGAAGGTAGAACTGTTGAGCAAAAGGTCCTGGAGTCCAATCCTGTACTAGAAGCCTTTGGCAATGCGAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAGGGGAAGAATTTCAGGGGCTGCTATCAGGACTTATCTGCTTGAAAGATCACGTGTTTGCCAGGTGTCTGATCCAGAGAGGAACTATCATTGTTTCTACATGCTCTGTGCTGCACCTCCAGAGGATGTTAAAAAGTACAAATTAGGAGATCCAAGAATGTTTCATTATCTGAATCAATCAAATTGCTTTGAGTTGGAGGGACTTGATGAATCTAAAGAATATAGGGATACAAGGAGAGCAATGGATATTGTTGGAATAAGTTCGGAGGAGCAGGATGCAATTTTTAAAGTTGTTGCTGCAATTTTACATCTTGGTAACATCGAATTTGCGAAAGGGAAGGAGATAGACTCATCTGTGCCCAGAGATGAAAAATCTTGGTTCCATCTACAGACTGCTGCTGACCTTTTCATGTGTGATGCAAAAGCACTTGAAGATTCTCTTTGCAAACGTGTAATTGTTACTCGAGACGAAACAATTACAAAATGGCTGGATCCAGAAGCTGCTGCGCTCAGCCGAGATGCCTTGGCAAAGATTGTGTACTCAAGATTGTTTGACTGGTTGGTTGATAAAATTAATAATTCTATTGGTCAAGACCCTGAATCAAAATCCTTAATTGGTGTGCTGGATATTTATGGCTTTGAGAGTTTCAAGACTAACAGGTTTGTAACTGGCACACCTTTTGTTGTGTAA 1431 0.4144 MEWLHYMLVESKQEFLQQSQEQLAATANPIVGSRVWVEDPDVAWIDGEVLEAKGEVIKVLCTSGKTVVVKASSIYHKDTEVPPSGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRMFHYLNQSNCFELEGLDESKEYRDTRRAMDIVGISSEEQDAIFKVVAAILHLGNIEFAKGKEIDSSVPRDEKSWFHLQTAADLFMCDAKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYSRLFDWLVDKINNSIGQDPESKSLIGVLDIYGFESFKTNRFVTGTPFVV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03020 476 Pfam Myosin N-terminal SH3-like domain 32 74 IPR004009 GO:0003774|GO:0005524|GO:0016459
Spst1g03020 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 468 IPR027417 -
Spst1g03020 476 Gene3D - 33 76 IPR008989 GO:0003774|GO:0005524|GO:0051015
Spst1g03020 476 Gene3D Kinesin motor domain 87 460 IPR036961 -
Spst1g03020 476 Pfam Myosin head (motor domain) 86 468 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst1g03020 476 Gene3D Myosin VI head, motor domain, U50 subdomain 334 444 - -
Spst1g03020 476 FunFam Myosin heavy chain 274 329 - -
Spst1g03020 476 ProSiteProfiles Myosin motor domain profile. 84 476 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst1g03020 476 PRINTS Myosin heavy chain signature 451 476 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst1g03020 476 PRINTS Myosin heavy chain signature 171 196 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst1g03020 476 PRINTS Myosin heavy chain signature 218 245 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst1g03020 476 PRINTS Myosin heavy chain signature 114 133 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst1g03020 476 Gene3D - 274 332 - -
Spst1g03020 476 PANTHER MYOSIN 80 468 - -
Spst1g03020 476 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 30 79 IPR004009 GO:0003774|GO:0005524|GO:0016459
Spst1g03020 476 SMART MYSc_2a 78 476 IPR001609 GO:0003774|GO:0005524|GO:0016459
Spst1g03020 476 FunFam Myosin 2 334 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03020 Spst-Chr1 38844044 38847300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03020 23 468 Myosins gene family AT1G04160 81.655 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03020 K10357 - gmx:100795648 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03020 1 38844044 38847300 Spst1g03020 1 38844044 38847300 ECH
Spst1g03020 1 38844044 38847300 Spst10g00179 10 1685958 1696044 PCT
Spst7g00695 7 6848321 6857031 Spst1g03020 1 38844044 38847300 PCT