Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03011 ATGGCACGTAGAAACTTTGGCACCCAAGTAACAGCACTTGTTGTAGATGACAATGCACTGAACCAAAAGATTCACCAAAGGCTGCTGGAGAGTGTTGGAGTGAGAAATGAGGTGGTGACAAATGGGAAAGAAGCAGTGGACATTCATTGCCATGGAAAAAGATTTGACCTCATTCTCATGGACATGGACATGCCTATCATGAATGGCATTCAGGCAACAAAGGAACTTCGTTCAATGGGCATTGGGAGCATGATTGTTGGTGTGTCATCACGTTGTCCCGAAACAGAAATACGAAAGTTTATGGAATCAGGGTTGAATGACTACCATGAGAAACCCTTGAACACTGCTAAGCTTAACTCAATTCTTCATAAGATGAACCCTAATTTTACCAGTAATAATAAGTGA 405 0.4173 MARRNFGTQVTALVVDDNALNQKIHQRLLESVGVRNEVVTNGKEAVDIHCHGKRFDLILMDMDMPIMNGIQATKELRSMGIGSMIVGVSSRCPETEIRKFMESGLNDYHEKPLNTAKLNSILHKMNPNFTSNNK 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03011 134 CDD REC_hyHK_CKI1_RcsC-like 13 122 - -
Spst1g03011 134 Gene3D - 7 133 - -
Spst1g03011 134 ProSiteProfiles Response regulatory domain profile. 11 126 IPR001789 GO:0000160
Spst1g03011 134 SMART REC_2 10 122 IPR001789 GO:0000160
Spst1g03011 134 SUPERFAMILY CheY-like 10 125 IPR011006 -
Spst1g03011 134 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Spst1g03011 134 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03011 Spst-Chr1 38714680 38715202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03011 10 118 Response Regulator Gene Family AT3G04280 46.847 9.72e-29 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst1g03011 Response_reg 1.1e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03011 - - gmx:100794931 212.231