Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst1g03010 | ATGGAAGACGACCAGCAATACCCCATTCTCACGCCTTCGGGATTGCCTCGCCAAAACAAACCCTCCATTGCAGACGACGACGTCATGGAGCTGCTATGGCAAAACGGCCAGGTCGTGATGCAGAGTCAGAACCACCGTTCTTTCCGAAAACCGACGCCGCCTAGAGACTCCAACGATGCTTCTGCCGCCGGTCCTTCCACGGCCAGGGAGATTCGACCGCAGCTCGATAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCGTGGCTTCACTATCCAATCGACGACGACGTCGTACCTCCGTTGGATCAGACTTTCTGCGCCGATTTCCTCTACTCGCCGCCCACCATTAACAACAGCAGCGCCATCCAAACCCTCGCCCGTACGTCTCAACTGACGGAGCTCCGCCCGATGTCCGCACCGCCTCGACCTCCGGTTCCACCACCGAGGCGATCGGAACCGAAGACGCCGAACTTCGCGTACTTTGCAAGGCACAACACGAGAGCCGCCGAGCAGAGCGTGAAGCCCGCCGTGAGGGAATCCACAGTGGTGGATTCGTGCGACACGGCTCCGGCGGTTTCGAGAGTTTCGGAAACTGAGAGGAACGCGGCGGAACCGACGGAAGGAGACGCCGGTCCTCCGGTGCCTTCGACGAGTGCCGGTGGCGGAAGGAGCACTATGATGTGCGAAGTGACTATGGCGTCGTCCCCGGGCTGTTCTACTAGCAGCGGTGAGCCGGTTCACGTGGCAGCGACGGCGGAGGATAGGAAGCGGAAGGGTCGGGATGCGGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCGGAAGCAAAGAAACAAGTTCGAGGATCAACGTCGACAAAGAGATCACGTGCTGCGGAGGTCCATAATCTCTCTGAGAGGCTTTCACTTGCCATTTGCACACAGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAACAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAACAGTACATTCCAGCAATGGGAATGGGGGTTGGAATGGGTATGGGCATGGGTATGGAAATGGGAATGAACAGACCTGTAATGCCATTTCCCAATATGTTACCTGCTTCTGCTTTGCCAGGAGCAACTGCAGCTGCTCATTTGGGACCAAGGCTTCCAATGCCTCCTTTCCACATGCCGCGTTTTCCTGCTCCTGATTCATCTACAATGCAAGCACAAAATCAGACAGATAATACTATGGTCGCTGCTGGTCAACCTGATCCGAATCACTCACGTCTCCCAAACTTTACGGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTTCAAGTAATCCAGAATCAGGCAATGAACCAACCAAATGTTAACAAGCCCGGTACCAGTAGGGGCCATGAGAATCCGGAAAACCGTTAG | 1542 | 0.5331 | MEDDQQYPILTPSGLPRQNKPSIADDDVMELLWQNGQVVMQSQNHRSFRKPTPPRDSNDASAAGPSTAREIRPQLDNFNQHLFMQEGEMASWLHYPIDDDVVPPLDQTFCADFLYSPPTINNSSAIQTLARTSQLTELRPMSAPPRPPVPPPRRSEPKTPNFAYFARHNTRAAEQSVKPAVRESTVVDSCDTAPAVSRVSETERNAAEPTEGDAGPPVPSTSAGGGRSTMMCEVTMASSPGCSTSSGEPVHVAATAEDRKRKGRDAEEWECQSEDVDFESEAKKQVRGSTSTKRSRAAEVHNLSERLSLAICTQRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYIPAMGMGVGMGMGMGMEMGMNRPVMPFPNMLPASALPGATAAAHLGPRLPMPPFHMPRFPAPDSSTMQAQNQTDNTMVAAGQPDPNHSRLPNFTDPYQQYLGPHQMQFQVIQNQAMNQPNVNKPGTSRGHENPENR | 513 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst1g03010 | 513 | MobiDBLite | consensus disorder prediction | 479 | 505 | - | - | |
Spst1g03010 | 513 | PANTHER | TRANSCRIPTION FACTOR PIF3 | 18 | 471 | IPR044273 | GO:0003700|GO:0006355 | |
Spst1g03010 | 513 | Pfam | Helix-loop-helix DNA-binding domain | 314 | 354 | IPR011598 | GO:0046983 | |
Spst1g03010 | 513 | MobiDBLite | consensus disorder prediction | 188 | 226 | - | - | |
Spst1g03010 | 513 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 313 | 382 | IPR036638 | GO:0046983 | |
Spst1g03010 | 513 | MobiDBLite | consensus disorder prediction | 255 | 297 | - | - | |
Spst1g03010 | 513 | Gene3D | - | 291 | 362 | IPR036638 | GO:0046983 | |
Spst1g03010 | 513 | MobiDBLite | consensus disorder prediction | 141 | 157 | - | - | |
Spst1g03010 | 513 | SMART | finulus | 310 | 359 | IPR011598 | GO:0046983 | |
Spst1g03010 | 513 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 304 | 353 | IPR011598 | GO:0046983 | |
Spst1g03010 | 513 | MobiDBLite | consensus disorder prediction | 40 | 71 | - | - | |
Spst1g03010 | 513 | CDD | bHLH_AtPIF_like | 296 | 367 | IPR047265 | - | |
Spst1g03010 | 513 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Spst1g03010 | 513 | MobiDBLite | consensus disorder prediction | 479 | 513 | - | - | |
Spst1g03010 | 513 | MobiDBLite | consensus disorder prediction | 133 | 158 | - | - | |
Spst1g03010 | 513 | FunFam | Basic helix-loop-helix transcription factor | 291 | 362 | - | - | |
Spst1g03010 | 513 | MobiDBLite | consensus disorder prediction | 255 | 269 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst1g03010 | Spst-Chr1 | 38693765 | 38699083 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst1g03010 | 15 | 359 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT2G20180 | 43.052 | 1.64e-62 | 206 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Spst1g03010 | HLH | 1.8e-09 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst1g03010 | - | - | gmx:100797225 | 736.873 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst1g03010 | 1 | 38693765 | 38699083 | Spst1g03010 | 1 | 38693765 | 38699083 | ECH | |
Spst1g03010 | 1 | 38693765 | 38699083 | Spst7g00712 | 7 | 7052648 | 7055797 | PCT |