Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03010 ATGGAAGACGACCAGCAATACCCCATTCTCACGCCTTCGGGATTGCCTCGCCAAAACAAACCCTCCATTGCAGACGACGACGTCATGGAGCTGCTATGGCAAAACGGCCAGGTCGTGATGCAGAGTCAGAACCACCGTTCTTTCCGAAAACCGACGCCGCCTAGAGACTCCAACGATGCTTCTGCCGCCGGTCCTTCCACGGCCAGGGAGATTCGACCGCAGCTCGATAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCGTGGCTTCACTATCCAATCGACGACGACGTCGTACCTCCGTTGGATCAGACTTTCTGCGCCGATTTCCTCTACTCGCCGCCCACCATTAACAACAGCAGCGCCATCCAAACCCTCGCCCGTACGTCTCAACTGACGGAGCTCCGCCCGATGTCCGCACCGCCTCGACCTCCGGTTCCACCACCGAGGCGATCGGAACCGAAGACGCCGAACTTCGCGTACTTTGCAAGGCACAACACGAGAGCCGCCGAGCAGAGCGTGAAGCCCGCCGTGAGGGAATCCACAGTGGTGGATTCGTGCGACACGGCTCCGGCGGTTTCGAGAGTTTCGGAAACTGAGAGGAACGCGGCGGAACCGACGGAAGGAGACGCCGGTCCTCCGGTGCCTTCGACGAGTGCCGGTGGCGGAAGGAGCACTATGATGTGCGAAGTGACTATGGCGTCGTCCCCGGGCTGTTCTACTAGCAGCGGTGAGCCGGTTCACGTGGCAGCGACGGCGGAGGATAGGAAGCGGAAGGGTCGGGATGCGGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCGGAAGCAAAGAAACAAGTTCGAGGATCAACGTCGACAAAGAGATCACGTGCTGCGGAGGTCCATAATCTCTCTGAGAGGCTTTCACTTGCCATTTGCACACAGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAACAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAACAGTACATTCCAGCAATGGGAATGGGGGTTGGAATGGGTATGGGCATGGGTATGGAAATGGGAATGAACAGACCTGTAATGCCATTTCCCAATATGTTACCTGCTTCTGCTTTGCCAGGAGCAACTGCAGCTGCTCATTTGGGACCAAGGCTTCCAATGCCTCCTTTCCACATGCCGCGTTTTCCTGCTCCTGATTCATCTACAATGCAAGCACAAAATCAGACAGATAATACTATGGTCGCTGCTGGTCAACCTGATCCGAATCACTCACGTCTCCCAAACTTTACGGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTTCAAGTAATCCAGAATCAGGCAATGAACCAACCAAATGTTAACAAGCCCGGTACCAGTAGGGGCCATGAGAATCCGGAAAACCGTTAG 1542 0.5331 MEDDQQYPILTPSGLPRQNKPSIADDDVMELLWQNGQVVMQSQNHRSFRKPTPPRDSNDASAAGPSTAREIRPQLDNFNQHLFMQEGEMASWLHYPIDDDVVPPLDQTFCADFLYSPPTINNSSAIQTLARTSQLTELRPMSAPPRPPVPPPRRSEPKTPNFAYFARHNTRAAEQSVKPAVRESTVVDSCDTAPAVSRVSETERNAAEPTEGDAGPPVPSTSAGGGRSTMMCEVTMASSPGCSTSSGEPVHVAATAEDRKRKGRDAEEWECQSEDVDFESEAKKQVRGSTSTKRSRAAEVHNLSERLSLAICTQRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYIPAMGMGVGMGMGMGMEMGMNRPVMPFPNMLPASALPGATAAAHLGPRLPMPPFHMPRFPAPDSSTMQAQNQTDNTMVAAGQPDPNHSRLPNFTDPYQQYLGPHQMQFQVIQNQAMNQPNVNKPGTSRGHENPENR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03010 513 MobiDBLite consensus disorder prediction 479 505 - -
Spst1g03010 513 PANTHER TRANSCRIPTION FACTOR PIF3 18 471 IPR044273 GO:0003700|GO:0006355
Spst1g03010 513 Pfam Helix-loop-helix DNA-binding domain 314 354 IPR011598 GO:0046983
Spst1g03010 513 MobiDBLite consensus disorder prediction 188 226 - -
Spst1g03010 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 382 IPR036638 GO:0046983
Spst1g03010 513 MobiDBLite consensus disorder prediction 255 297 - -
Spst1g03010 513 Gene3D - 291 362 IPR036638 GO:0046983
Spst1g03010 513 MobiDBLite consensus disorder prediction 141 157 - -
Spst1g03010 513 SMART finulus 310 359 IPR011598 GO:0046983
Spst1g03010 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Spst1g03010 513 MobiDBLite consensus disorder prediction 40 71 - -
Spst1g03010 513 CDD bHLH_AtPIF_like 296 367 IPR047265 -
Spst1g03010 513 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g03010 513 MobiDBLite consensus disorder prediction 479 513 - -
Spst1g03010 513 MobiDBLite consensus disorder prediction 133 158 - -
Spst1g03010 513 FunFam Basic helix-loop-helix transcription factor 291 362 - -
Spst1g03010 513 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03010 Spst-Chr1 38693765 38699083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03010 15 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.052 1.64e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g03010 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03010 - - gmx:100797225 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03010 1 38693765 38699083 Spst1g03010 1 38693765 38699083 ECH
Spst1g03010 1 38693765 38699083 Spst7g00712 7 7052648 7055797 PCT