Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g02998 ATGGCTTCGCGGCGGCTCCGGGACCTCCAATCCCAAGCGGCGAACAAGATCTGCGTCGACTGTTCCCAGAAGAATCCGCAATGGGCGTCGGTGTCGTATGGCGTTTTCATGTGCCTAGAGTGCTCCGGCAAGCACCGTGGCCTTGGCGTCCACATCTCATTCGTCCGATCCGTCACCATGGATTCCTGGTCCGAAATACAGATCAAGAAGATGGAAGCAGGAGGCAACGACAAACTCAACGCCTTCCTCGCGCAATACGGCATCGCCAAGGAAACCGACATCATCGCCAAGTACAATTCCAACGCCGCCTCGGTCTACCGCGACCGCATCCAGGCAATCGCCGACGGACGTCCCTGGCGGGATCCCCCCGTCGTCAAGGAGAAAGTCCACTCCTCCGCCTCCAAGGGGAAGCCGCCGCTCTCCGCCAGCAACAACGGCGGCTGGGATAATTGGGACGCGGACGACGGGTTCGGATCGCCTCGGGTCGGATCCGATCTGCGGCGGAACCAGTCCACCGGCGATGTCAGGGGGTTCGGTAGTGGAGGGAGCGTGTCAAGGTCGAAGTCGACGGAGGATATGTACACGCGGGCGCAGCTGGAGGCCTCTGCTGCCAATAAGGAAGATTTCTTCGCGAGGAAGAGGGTGGAAAATGAATTGCGACCGGAGGGGCTTCCGCCGTCGCAGGGTGGTAAGTACGTCGGATTCGGATCTGGCCCCGCCCCGAACCACAGGGTTAATCAGCAAAATGATGTTTTCTCTGTCGTTTCTCAGGGATTTGGTAAATTGTCGTTGGCTGCTGCTTCTGCGGCTCAGTCTGCTGCGAATGTCGTTCAGGCAGGGACTAAAGAGATCTCTGCGAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATTGGACAAAGGACATGGGGTATAATGAGAGGGGTCATGGCACTGGCTTCACAAAAGGTTGAAGAATACACTAGGGATAACCCAAATTCGACGTCTGAGAACTGGAACCAGAATGAAACTAATAAAAACGGTTTCTATCAGGACAACAAAGGCTGGAATTCTTCTACCAGAGAAGGACAACAGTCTTCGGGTGGACAAACTAATTCGTATCACTCAAGCTCTTGGGATGATTGGGGCCACGAAGGTTCTAGGAAGGAAGAACCTGCTAAAGGATCGGCTCATCATTCATCAGGTGGGCAGTCTGATACTTATAACTCGAGCTCTTGGGATGATTGGGACCATGAAGATACAAGGAAGAAAGAACCAGCAAAAGGGTCTGCTACCCGAAGTAGTGATGGTTGGGCTGGTTGGGATAATGCCAAAGATGATGGAGTTGATGATATGTACGGGAATGCATCTAACAATAAAGCTGCTGGCCATAATGAGAAGGCGGGTGTTGCCTGGACAGGAGGAGGTTTTCTCTAA 1455 0.5326 MASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLAQYGIAKETDIIAKYNSNAASVYRDRIQAIADGRPWRDPPVVKEKVHSSASKGKPPLSASNNGGWDNWDADDGFGSPRVGSDLRRNQSTGDVRGFGSGGSVSRSKSTEDMYTRAQLEASAANKEDFFARKRVENELRPEGLPPSQGGKYVGFGSGPAPNHRVNQQNDVFSVVSQGFGKLSLAAASAAQSAANVVQAGTKEISAKVKEGGYDYKVNETVNVVSQKTSEIGQRTWGIMRGVMALASQKVEEYTRDNPNSTSENWNQNETNKNGFYQDNKGWNSSTREGQQSSGGQTNSYHSSSWDDWGHEGSRKEEPAKGSAHHSSGGQSDTYNSSSWDDWDHEDTRKKEPAKGSATRSSDGWAGWDNAKDDGVDDMYGNASNNKAAGHNEKAGVAWTGGGFL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g02998 484 MobiDBLite consensus disorder prediction 418 436 - -
Spst1g02998 484 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Spst1g02998 484 SUPERFAMILY ArfGap/RecO-like zinc finger 3 109 IPR037278 -
Spst1g02998 484 Pfam Putative GTPase activating protein for Arf 4 106 IPR001164 GO:0005096
Spst1g02998 484 SMART arf_gap_3 3 119 IPR001164 GO:0005096
Spst1g02998 484 CDD ArfGap_ArfGap1 2 116 - -
Spst1g02998 484 ProSiteProfiles ARF GTPase-activating proteins domain profile. 3 109 IPR001164 GO:0005096
Spst1g02998 484 MobiDBLite consensus disorder prediction 117 193 - -
Spst1g02998 484 MobiDBLite consensus disorder prediction 333 386 - -
Spst1g02998 484 MobiDBLite consensus disorder prediction 387 402 - -
Spst1g02998 484 PRINTS HIV Rev interacting protein signature 55 76 IPR001164 GO:0005096
Spst1g02998 484 PRINTS HIV Rev interacting protein signature 15 34 IPR001164 GO:0005096
Spst1g02998 484 PRINTS HIV Rev interacting protein signature 34 51 IPR001164 GO:0005096
Spst1g02998 484 MobiDBLite consensus disorder prediction 333 472 - -
Spst1g02998 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 2 406 IPR044519 GO:0005096|GO:0016192
Spst1g02998 484 FunFam ADP-ribosylation factor GTPase-activating protein 1 128 - -
Spst1g02998 484 MobiDBLite consensus disorder prediction 164 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g02998 Spst-Chr1 38548005 38550897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g02998 4 86 C2H2 Transcription Factor Family AT4G21160 48.810 7.78e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g02998 K12492 - gmx:100778302 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g02998 1 38548005 38550897 Spst1g02998 1 38548005 38550897 ECH
Spst1g02998 1 38548005 38550897 Spst7g00725 7 7253028 7256222 PCT